Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1091
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016422-5|AAG24171.1|  291|Caenorhabditis elegans Serpentine re...    34   0.12 
CU457740-3|CAM36333.1|  367|Caenorhabditis elegans Hypothetical ...    31   1.1  
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    29   3.4  
AC006625-10|AAK68271.1|  325|Caenorhabditis elegans Hypothetical...    28   7.8  

>AF016422-5|AAG24171.1|  291|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 58 protein.
          Length = 291

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 156 CYFLLWKTLVQSISFFCVNCNTLFIFRFNFIWKKLLLQ 269
           CY   WKT  Q++ +FC+   T  +F   FIW   +L+
Sbjct: 167 CYHEYWKTFSQTM-YFCIGTLTFILFFRLFIWNHFILR 203


>CU457740-3|CAM36333.1|  367|Caenorhabditis elegans Hypothetical
           protein C50E10.3 protein.
          Length = 367

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -3

Query: 700 YILFVTIIYHCVVIVRILTIFAYIIMKFVPTSIMLI 593
           Y+LF+ I++   +++ I+ +  Y +MKF+   I LI
Sbjct: 166 YLLFLIILFQQFMVLSIVYLLTYNLMKFINVLIFLI 201


>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human niemann
            pick c disease)related protein 2 protein.
          Length = 1274

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = -3

Query: 721  FFFFIDNYILFVTIIYHCVVIVRILTIFAYIIMKFVPTSIMLITHLI*CNTHYHMLPPHS 542
            FF + + Y+   T +Y  VV+V  +      +   V  +  L+T  +  +++ H++    
Sbjct: 1068 FFPYYEQYLTLSTTVYTLVVLVLFVAFVTISLFLRVNLAGSLVTVFVLLSSYLHLMEWMY 1127

Query: 541  LYHFTENLVIV 509
            L   T N+V V
Sbjct: 1128 LLGITVNVVSV 1138


>AC006625-10|AAK68271.1|  325|Caenorhabditis elegans Hypothetical
           protein C55B7.11 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
 Frame = -2

Query: 671 LCCNRQNLNNFRLHYNEI----CAYFNYV 597
           L C  Q+L +F +H+NE+     A FNYV
Sbjct: 107 LACILQSLRSFNVHFNEVYAIRTAIFNYV 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,908,345
Number of Sequences: 27780
Number of extensions: 270653
Number of successful extensions: 718
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)