Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1091
(723 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 26 0.31
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 25 0.72
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 24 1.7
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 23 2.2
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 23 2.9
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 23 2.9
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 21 8.9
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 21 8.9
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 21 8.9
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 21 8.9
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 21 8.9
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 21 8.9
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 21 8.9
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 21 8.9
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 21 8.9
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 26.2 bits (55), Expect = 0.31
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -3
Query: 247 IKLNLNINKVLQLTQKKEILCTNVF--HNKK*HYF 149
+KL L +++++ L K +IL TNV+ H + H F
Sbjct: 48 VKLGLRLSQLIDLNLKDQILTTNVWLEHEWQDHKF 82
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 25.0 bits (52), Expect = 0.72
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 698 YSFCYNHLSLCCNRQNLNNFRLHYNEIC--AYFNYVN 594
Y + YN+ N N NN+ +YN C Y+N +N
Sbjct: 329 YKYNYNN-----NNYNNNNYNNNYNNNCKKLYYNIIN 360
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 23.8 bits (49), Expect = 1.7
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = -2
Query: 653 NLNNFRLHYNEICAYFNYVNHSSDIM*YALSY---ATTSQPLPFY 528
N NN+ +YN Y N N++ + Y ++Y P+P Y
Sbjct: 326 NYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQIPVPVPVPIY 370
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 23.4 bits (48), Expect = 2.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 352 RDQLICFNCDLFRLLKSVLDSYNAIAP 432
R+QLI + L + L+ +DS N I P
Sbjct: 336 RNQLIQYVATLEKRLRDAIDSGNVITP 362
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 23.0 bits (47), Expect = 2.9
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -2
Query: 662 NRQNLNNFRLHYNEICAYFNYVN 594
N N N+ +YN Y+N +N
Sbjct: 307 NNYNYKNYNNNYNSKKLYYNIIN 329
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 23.0 bits (47), Expect = 2.9
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -2
Query: 662 NRQNLNNFRLHYNEICAYFNYVN 594
N N N+ +YN Y+N +N
Sbjct: 318 NNYNYKNYNNNYNSKKLYYNIIN 340
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 8.9
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = -2
Query: 677 LSLCCNRQNLNNFRLHYNEICAYFNYV 597
+S N N NN+ +Y + NY+
Sbjct: 82 ISSLSNNYNYNNYNNNYKPLYYNINYI 108
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 8.9
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = -2
Query: 677 LSLCCNRQNLNNFRLHYNEICAYFNYV 597
+S N N NN+ +Y + NY+
Sbjct: 82 ISSLSNNYNYNNYNNNYKPLYYNINYI 108
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 8.9
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = -2
Query: 677 LSLCCNRQNLNNFRLHYNEICAYFNYV 597
+S N N NN+ +Y + NY+
Sbjct: 82 ISSLSNNYNYNNYNNNYKPLYYNINYI 108
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.4 bits (43), Expect = 8.9
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = -2
Query: 677 LSLCCNRQNLNNFRLHYNEICAYFNYV 597
+S N N NN+ +Y + NY+
Sbjct: 82 ISSLSNNYNYNNYNNNYKPLYYNINYI 108
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 8.9
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = -2
Query: 653 NLNNFRLHYNEIC--AYFNYVNHSSDI 579
N NN++ +YN C Y+N +N+ I
Sbjct: 92 NNNNYKYNYNNNCKKLYYN-INYIEQI 117
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 8.9
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = -2
Query: 677 LSLCCNRQNLNNFRLHYNEICAYFNYV 597
+S N N NN+ +Y + NY+
Sbjct: 315 ISSLSNNYNYNNYNNNYKPLYYNINYI 341
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 8.9
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = -2
Query: 677 LSLCCNRQNLNNFRLHYNEICAYFNYV 597
+S N N NN+ +Y + NY+
Sbjct: 315 ISSLSNNYNYNNYNNNYKPLYYNINYI 341
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 8.9
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = -2
Query: 677 LSLCCNRQNLNNFRLHYNEICAYFNYV 597
+S N N NN+ +Y + NY+
Sbjct: 315 ISSLSNNYNYNNYNNNYKPLYYNINYI 341
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 8.9
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = -2
Query: 677 LSLCCNRQNLNNFRLHYNEICAYFNYV 597
+S N N NN+ +Y + NY+
Sbjct: 304 ISSLSNNYNYNNYNNNYKPLYYNINYI 330
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,839
Number of Sequences: 438
Number of extensions: 3830
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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