Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1090
         (554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   132   2e-31
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    36   0.026
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    28   5.2  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    28   5.2  
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    27   6.9  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  132 bits (318), Expect = 2e-31
 Identities = 57/65 (87%), Positives = 63/65 (96%)
 Frame = +2

Query: 56  HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 235
           HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLI
Sbjct: 16  HRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLI 75

Query: 236 KNGKK 250
           KNGKK
Sbjct: 76  KNGKK 80



 Score =  115 bits (277), Expect = 2e-26
 Identities = 52/65 (80%), Positives = 58/65 (89%)
 Frame = +1

Query: 244 KESDAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 423
           K+  AFVP DGCLN +EENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KK
Sbjct: 79  KKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKK 138

Query: 424 ERPRS 438
           ERPRS
Sbjct: 139 ERPRS 143


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 35.5 bits (78), Expect = 0.026
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +2

Query: 137 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 232
           G SH KGIVL+ V    K+PNS  RKC  V+L
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL 103


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 374 TLKRTPGMSPTA*PLRPNPATSTSS 300
           T  RTP  +P A P RP P+ S+++
Sbjct: 38  TTMRTPAATPAAPPTRPTPSRSSAA 62


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 374 TLKRTPGMSPTA*PLRPNPATSTSS 300
           T  RTP  +P A P RP P+ S+++
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRSSAA 191


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 238 ERKESDAFVPRDGCLNHIEENDEVLVAG 321
           E K S+  + RDGC   I+++  V VAG
Sbjct: 435 ETKSSEMIIKRDGCFEVIDDHLMVSVAG 462


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,097,568
Number of Sequences: 27780
Number of extensions: 284450
Number of successful extensions: 705
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)