Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1089
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc...    27   2.9  
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom...    27   2.9  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.7  

>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
           L20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -1

Query: 142 RRFRPASRLFLIKILHHNRSVKHRMRFKKIR 50
           + FR  +R+  ++ ++ + + +HR RF+ IR
Sbjct: 91  KEFRDTTRVGAVEAMYADMAARHRARFRSIR 121


>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
           protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -1

Query: 142 RRFRPASRLFLIKILHHNRSVKHRMRFKKIR 50
           + FR  +R+  ++ ++ + + +HR RF+ IR
Sbjct: 91  KEFRDTTRVGAVEAMYADMAARHRARFRSIR 121


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 238 NLLPLDMVHKYFAEYVTTKDLPSSW 164
           N++P  +  K FA+YV TK++  S+
Sbjct: 277 NVVPKQLSEKRFAKYVPTKEMVESF 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,194
Number of Sequences: 5004
Number of extensions: 48721
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)