Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1089
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0093 - 986981-987625                                             28   7.0  
05_07_0207 - 28407886-28407924,28408854-28408884,28408917-284089...    28   9.2  
04_04_0004 - 22089250-22089582,22090050-22090325,22090626-220912...    28   9.2  

>04_01_0093 - 986981-987625
          Length = 214

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 329 VKFEHRVLTYSSDNADVASQGYQHSRKKTKQPFTPRYGA*ILR 201
           V+F+ R ++   +   VA+   Q +RKK K+P  P  GA  +R
Sbjct: 152 VRFQ-RQMSAGHEAVKVAAAAEQEARKKKKKPLIPLVGALFMR 193


>05_07_0207 -
           28407886-28407924,28408854-28408884,28408917-28408983,
           28409430-28409502,28409573-28409650,28409914-28409976,
           28410076-28410168,28410250-28410292,28411632-28411816
          Length = 223

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -3

Query: 371 LRSTTLARVRVSNFVKFEHRVLTYSSDNADVASQGYQHSRKKTKQPFTPR 222
           LRST LA +  +       RV   +SD  D  S  +  +RK  K+PF PR
Sbjct: 27  LRSTLLALMPPAAAAASRFRVSASASDVPDFLSSDWLETRK--KKPFGPR 74


>04_04_0004 -
           22089250-22089582,22090050-22090325,22090626-22091282,
           22091367-22091603
          Length = 500

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +1

Query: 427 VGCDCGLVYSSQATGSTRTVTGGIWLKHITRDIYLCNYRSVLFGIIIN*SMFSIELKFNQ 606
           VG D G  Y+S +      + G  WL   TR+    +Y + L G      MFS + K   
Sbjct: 233 VGGDVGAYYASYSGYQDELLWGSAWLLWATRNASYLDYLASL-GANDGVDMFSWDNKLAG 291

Query: 607 FKLLISK 627
            ++L+S+
Sbjct: 292 ARVLLSR 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,481,797
Number of Sequences: 37544
Number of extensions: 283102
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)