Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1089
         (757 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29735| Best HMM Match : Kunitz_BPTI (HMM E-Value=2.7)               30   2.3  
SB_29616| Best HMM Match : Orthopox_F14 (HMM E-Value=1.2)              30   2.3  
SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)          29   5.4  
SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)                       28   9.4  

>SB_29735| Best HMM Match : Kunitz_BPTI (HMM E-Value=2.7)
          Length = 211

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 559 YQIKRTCNYKDKCRVLCA*AKYR 491
           Y ++RTC  KD CR +C   K R
Sbjct: 101 YAVRRTCGDKDDCRKICTDPKLR 123


>SB_29616| Best HMM Match : Orthopox_F14 (HMM E-Value=1.2)
          Length = 171

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 559 YQIKRTCNYKDKCRVLCA*AKYR 491
           Y ++RTC  KD CR +C   K R
Sbjct: 37  YAVRRTCGDKDDCRKICTDPKLR 59


>SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)
          Length = 418

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 409 DPTKNSVGCDCGLVYSSQATGSTRTVTGGIWLKHITRDIYLCNYRSVLFGIII 567
           +P K     DCG+ Y+S   G T    G  W   ++  +YL +Y  V  G ++
Sbjct: 240 EPAKPKPRFDCGIKYTSNIIGGTDAAVGE-WPWQVS--LYLTHYGPVCGGTLL 289


>SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)
          Length = 883

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 299 SSDNADVASQGYQHSRKKTKQPFTPRY 219
           + D+ D    G    RKK+KQP TP Y
Sbjct: 854 ADDDDDSDDNGIHDRRKKSKQPGTPAY 880


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,106,890
Number of Sequences: 59808
Number of extensions: 349976
Number of successful extensions: 704
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)