Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1089
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U28733-2|AAA68303.3|  381|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical
           protein C08F11.2 protein.
          Length = 315

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -1

Query: 127 ASRLFLIKILHHNRSVKHRMRFKKIRNMHGPCVFKFIGVSLI 2
           A+ +F + ++ +NR  K  +R +  + +H P    F  +SL+
Sbjct: 32  ANNIFFVLLIVYNRRKKLDLRDQGFKELHAPIFINFFFISLV 73


>U28733-2|AAA68303.3|  381|Caenorhabditis elegans Hypothetical
           protein C54A12.2 protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 168 EEGKSFVVTYSAKYLCTISRGKRLFGFFPTMLIALRGYISV 290
           +E +SFVV Y+AKY+  +    +    +  +LI +  +I+V
Sbjct: 151 DEQRSFVVAYTAKYVYPLCMMAKTCSLYIMVLITIERWIAV 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,974,700
Number of Sequences: 27780
Number of extensions: 270394
Number of successful extensions: 616
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)