Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1089
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   1.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.1  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   3.1  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   5.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 282 ISVIGRVGEHTVLKLDEVANTNPSK 356
           ISV+ +V  HT+ KLDE+   N  K
Sbjct: 140 ISVVQKVS-HTLYKLDEIIERNGDK 163


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -3

Query: 140 TISTRFEAVSNKNLTSQSFGETQNAF*KNQEYAWALRIQIYRRVIN 3
           T    FE++ N  ++ QS  + +N   K ++Y    +   Y  V+N
Sbjct: 460 TYFDHFESMLNNGVSIQSHAKAKNTMIKARQYRLNHKPFTYHIVVN 505


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -3

Query: 140 TISTRFEAVSNKNLTSQSFGETQNAF*KNQEYAWALRIQIYRRVIN 3
           T    FE++ N  ++ QS  + +N   K ++Y    +   Y  V+N
Sbjct: 460 TYFDHFESMLNNGVSIQSHAKAKNTMIKARQYRLNHKPFTYHIVVN 505


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -3

Query: 140 TISTRFEAVSNKNLTSQSFGETQNAF*KNQEYAWALRIQIYRRVIN 3
           T    FE++ N  ++ QS  + +N   K ++Y    +   Y  V+N
Sbjct: 86  TYFDHFESMLNNGVSIQSHAKAKNTMIKARQYRLNHKPFTYHIVVN 131


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 373 FCEARLLLGFVLATSSSLSTVCSPTR 296
           FC   ++  F    S SLS +C+ TR
Sbjct: 48  FCGPNVINPFFCDMSPSLSLLCADTR 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,174
Number of Sequences: 438
Number of extensions: 3081
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)