Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1089
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic...    30   1.4  
At2g15610.1 68415.m01788 expressed protein                             29   3.3  
At4g02410.1 68417.m00326 lectin protein kinase family protein co...    29   4.4  
At2g37680.1 68415.m04621 phytochrome A specific signal transduct...    28   7.7  
At1g49920.1 68414.m05598 zinc finger protein-related weak simila...    28   7.7  

>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
           Nicotiana tabacum, EMBL:AB009883
          Length = 1008

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/42 (38%), Positives = 27/42 (64%)
 Frame = -3

Query: 365 STTLARVRVSNFVKFEHRVLTYSSDNADVASQGYQHSRKKTK 240
           ST+LA +R    V+F+  V+  S++N + A+Q  +  RKK+K
Sbjct: 500 STSLASLRKK--VRFDDSVVERSTENGETATQTSKRERKKSK 539


>At2g15610.1 68415.m01788 expressed protein
          Length = 185

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 171 LHGSTSLRTSDDFDPLRGCF 112
           LH S S  T+DD + LRGCF
Sbjct: 41  LHRSKSCVTNDDIEELRGCF 60


>At4g02410.1 68417.m00326 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain,
           PF00139: Legume lectins beta domain and PF00138: Legume
           lectins alpha domain
          Length = 674

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +3

Query: 45  IFLIFLKRILCFTERL*CKIFIRNSLEAGRNRLRSEDLCYHEEG 176
           + LIFL R +    R   + F     E G+NRLR +DL Y  +G
Sbjct: 311 VSLIFLVRFIVRRRRKFAEEFEDWETEFGKNRLRFKDLYYATKG 354


>At2g37680.1 68415.m04621 phytochrome A specific signal transduction
           component (PAT3) / far-red elongated hypocotyl protein 1
           (FHY1) identical to phytochrome A specific signal
           transduction component PAT3 [Arabidopsis thaliana]
           gi|19421998|gb|AAL87850; identical to far-red elongated
           hypocotyl protein 1 [Arabidopsis thaliana]
           gi|17148773|gb|AAL35819
          Length = 313

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 116 VSNKNLTSQSFGETQNAF*KNQEYAWALRIQI 21
           V   N  +Q+F  TQN   + +E AW + +QI
Sbjct: 5   VVESNTPAQAFSGTQNVSNQQKEEAWRVNVQI 36


>At1g49920.1 68414.m05598 zinc finger protein-related weak
           similarity to mudrA [Zea mays] GI:540581, MURAZC [Zea
           mays] GI:1857256; contains Pfam profiles PF03108: MuDR
           family transposase, PF04434: SWIM zinc finger
          Length = 785

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 436 DCGLVYSSQATGSTRTVTGGIWLKHITRDIYLC 534
           + G   S   +GST T+  G+WL+  T  + LC
Sbjct: 153 EVGDTNSGSGSGSTPTLVSGLWLEGDTMRVGLC 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,898,298
Number of Sequences: 28952
Number of extensions: 245540
Number of successful extensions: 502
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)