Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1088
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772...    67   5e-12
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018     66   1e-11
07_03_0078 - 13147741-13148913                                         30   0.64 
10_08_0507 + 18401266-18401341,18401448-18401633,18401918-184019...    27   7.8  

>01_06_1294 -
           36076524-36076554,36076821-36076891,36077221-36077275,
           36077363-36077562,36078614-36078715
          Length = 152

 Score = 67.3 bits (157), Expect = 5e-12
 Identities = 39/78 (50%), Positives = 46/78 (58%)
 Frame = +2

Query: 20  PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 199
           P+  + VG+ KGH  TK          + +  RP+  KG  TK   FVR L+REVVG A 
Sbjct: 6   PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAP 55

Query: 200 YEKRAMELLKVSKDKRAL 253
           YEKR  ELLKV KDKRAL
Sbjct: 56  YEKRITELLKVGKDKRAL 73



 Score = 39.1 bits (87), Expect = 0.001
 Identities = 16/25 (64%), Positives = 22/25 (88%)
 Frame = +1

Query: 262 KRRLGTHIRAKRKREELSNVLAQMR 336
           KR+LGTH RAK+KREE++ V+ +MR
Sbjct: 77  KRKLGTHKRAKKKREEMAGVIRKMR 101


>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
          Length = 113

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 38/78 (48%), Positives = 46/78 (58%)
 Frame = +2

Query: 20  PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 199
           P+  + VG+ KGH  TK          + +  RP+  KG  TK   FVR+L+REV G A 
Sbjct: 6   PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAP 55

Query: 200 YEKRAMELLKVSKDKRAL 253
           YEKR  ELLKV KDKRAL
Sbjct: 56  YEKRITELLKVGKDKRAL 73



 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 17/25 (68%), Positives = 22/25 (88%)
 Frame = +1

Query: 262 KRRLGTHIRAKRKREELSNVLAQMR 336
           KR+LGTH RAK+KREE++ VL +MR
Sbjct: 77  KRKLGTHKRAKKKREEMAGVLRKMR 101


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 123 AGLILMALSVIPLRPADILVVLWPF 49
           AGL+  AL VIP  P  + +V WPF
Sbjct: 71  AGLLYFALVVIPALPGVLRLVAWPF 95


>10_08_0507 +
           18401266-18401341,18401448-18401633,18401918-18401953,
           18402244-18402650,18402998-18403099,18403206-18403433
          Length = 344

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 132 FSLAGLILMALSVIPLRPADILVVLWPFRRPTAISKRGAMIF 7
           F + G  +  L VIPLR  D    L   +R   + K+GA +F
Sbjct: 211 FPIIGWAMYLLGVIPLRRMDSRSQLDCLKRCVDLVKKGASVF 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,933,530
Number of Sequences: 37544
Number of extensions: 178994
Number of successful extensions: 429
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)