Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1088
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...    66   9e-12
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    30   0.76 
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    30   0.76 
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    29   1.3  
U41556-11|AAK39190.2|  365|Caenorhabditis elegans Hypothetical p...    28   2.3  
AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    28   2.3  
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    28   2.3  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical ...    27   7.1  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score = 66.1 bits (154), Expect = 9e-12
 Identities = 34/74 (45%), Positives = 49/74 (66%)
 Frame = +2

Query: 32  IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 211
           +AVGL KGH  T++           ++ R  R KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9   LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58

Query: 212 AMELLKVSKDKRAL 253
            +E+L++SKDKRAL
Sbjct: 59  VLEMLRISKDKRAL 72



 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 21/35 (60%), Positives = 25/35 (71%)
 Frame = +1

Query: 235 KRQACSEFLKRRLGTHIRAKRKREELSNVLAQMRK 339
           K +   +FLKRR+GTH RAK KREEL NV+   RK
Sbjct: 67  KDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRK 101


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = +2

Query: 116 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALS 256
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++AL+
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQALA 725


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = +2

Query: 116 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALS 256
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++AL+
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQALA 722


>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
           protein Y47D3A.26 protein.
          Length = 1205

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +2

Query: 113 IRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 247
           ++  ++  L T    +   L+REV G   Y++R  E LK+ K+ +
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETK 184


>U41556-11|AAK39190.2|  365|Caenorhabditis elegans Hypothetical
           protein C25B8.5 protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 150 CFV*RPFSLAGLILMALSVIPLRPADILVVLWPFRRPTAISKRGAMIFRL 1
           C V   F+  GL +  LS+  L    ++   WP     ++SKR A +F L
Sbjct: 62  CAVVHYFNWIGLAVSGLSLTLLNVDKLIYFRWPLNYDRSMSKRRAAMFCL 111


>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +2

Query: 128 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 247
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +2

Query: 128 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 247
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 161 VRDLVREVVGHAQYEKRAMELLKV 232
           +RD + EV+G+ Q++K  +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156


>AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical
           protein H23N18.4 protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +2

Query: 170 LVREVVGHAQYEKRAMELLKV 232
           +V+++V + +YEK A ELL+V
Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,312,915
Number of Sequences: 27780
Number of extensions: 151137
Number of successful extensions: 352
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)