Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1088
         (415 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ...    61   3e-10
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)            60   6e-10
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ...    60   8e-10
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ...    53   9e-08
At2g47115.1 68415.m05884 expressed protein                             28   2.9  
At5g05440.1 68418.m00586 expressed protein low similarity to cyt...    27   3.8  
At1g34590.1 68414.m04299 hypothetical protein                          27   5.0  
At3g24320.1 68416.m03054 DNA mismatch repair MutS family (MSH1) ...    27   6.6  
At1g61030.1 68414.m06871 expressed protein                             27   6.6  
At1g49790.1 68414.m05583 F-box family protein-related contains w...    26   8.7  

>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 112

 Score = 60.9 bits (141), Expect = 3e-10
 Identities = 34/72 (47%), Positives = 43/72 (59%)
 Frame = +2

Query: 38  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 217
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 218 ELLKVSKDKRAL 253
           ELLKV KDKRAL
Sbjct: 62  ELLKVGKDKRAL 73



 Score = 42.7 bits (96), Expect = 9e-05
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +1

Query: 262 KRRLGTHIRAKRKREELSNVLAQMR 336
           KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 77  KRKLGTHKRAKRKREEMSSVLRKMR 101


>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
          Length = 113

 Score = 60.1 bits (139), Expect = 6e-10
 Identities = 35/72 (48%), Positives = 42/72 (58%)
 Frame = +2

Query: 38  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 217
           VGL KGH  T+          + +  RP   KG  +K + F+R L+REV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61

Query: 218 ELLKVSKDKRAL 253
           ELLKV KDKRAL
Sbjct: 62  ELLKVGKDKRAL 73



 Score = 42.7 bits (96), Expect = 9e-05
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +1

Query: 262 KRRLGTHIRAKRKREELSNVLAQMR 336
           KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 77  KRKLGTHKRAKRKREEMSSVLRKMR 101


>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
           ribosomal protein L36, Arabidopsis thaliana,
           EMBL:AC004684
          Length = 108

 Score = 59.7 bits (138), Expect = 8e-10
 Identities = 35/72 (48%), Positives = 42/72 (58%)
 Frame = +2

Query: 38  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 217
           VGL KGH  TK          +    RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 8   VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57

Query: 218 ELLKVSKDKRAL 253
           ELLKV KDKRAL
Sbjct: 58  ELLKVGKDKRAL 69



 Score = 42.7 bits (96), Expect = 9e-05
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +1

Query: 262 KRRLGTHIRAKRKREELSNVLAQMR 336
           KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 73  KRKLGTHKRAKRKREEMSSVLRKMR 97


>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 103

 Score = 52.8 bits (121), Expect = 9e-08
 Identities = 30/69 (43%), Positives = 40/69 (57%)
 Frame = +2

Query: 38  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 217
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 218 ELLKVSKDK 244
           ELLKV+K K
Sbjct: 62  ELLKVAKRK 70



 Score = 42.7 bits (96), Expect = 9e-05
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +1

Query: 262 KRRLGTHIRAKRKREELSNVLAQMR 336
           KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 68  KRKLGTHKRAKRKREEMSSVLRKMR 92


>At2g47115.1 68415.m05884 expressed protein
          Length = 300

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = -2

Query: 381 IYHLMVMVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELRARL 241
           IY  M +V S+ GCL HL E      TL    DV  +    E R RL
Sbjct: 112 IYFAMGIVASVYGCLIHLKE-----LTLETDEDVVVEKVGDEFRRRL 153


>At5g05440.1 68418.m00586 expressed protein low similarity to
           cytokinin-specific binding protein [Vigna radiata]
           GI:4190976
          Length = 203

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 333 HLSEHVAKFFTLPLGADVCAQSSLQELRA 247
           H+ EHVA   T  +G D C  S +Q + A
Sbjct: 40  HVPEHVAMHHTHDVGPDQCCSSVVQMIHA 68


>At1g34590.1 68414.m04299 hypothetical protein
          Length = 820

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 11  IMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 127
           + AP  E A     GH++ +  A + G+TD+A  + PA+
Sbjct: 773 LKAPALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811


>At3g24320.1 68416.m03054 DNA mismatch repair MutS family (MSH1) low
           similarity to SP|Q56239 DNA mismatch repair protein mutS
           {Thermus aquaticus}; contains Pfam profiles PF05190:
           MutS family domain IV, PF01624: MutS domain I, PF01541:
           Endo/excinuclease amino terminal domain
          Length = 1118

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 384 CIYHLMVMVMSLGGCLPHLSEHVAKFFTLPLGA 286
           CI   +V  +   GCL  +S H+   F+LPL A
Sbjct: 860 CIAGSVVESLDTSGCLGIVSTHLHGIFSLPLTA 892


>At1g61030.1 68414.m06871 expressed protein 
          Length = 840

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -2

Query: 336 PHLSEHVAKFFTLPLGADVCAQSSLQELRARLSFDTLSNSIALFSY*ACPTTSRTKSRTN 157
           PHL+  V K F   + +D C+ +    +++ LS    + S  L     C TT +  S+++
Sbjct: 412 PHLASAVKKGFVTIISSDTCSTTGFSSIKS-LSVSKRNQSAFLV---GCSTTPKPGSQSS 467

Query: 156 L 154
           +
Sbjct: 468 V 468


>At1g49790.1 68414.m05583 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain
          Length = 283

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 60  LWPFRRPTAISKRGAMIF 7
           LW + RP A+SKRG + F
Sbjct: 259 LWFWTRPLAVSKRGNLFF 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,926,422
Number of Sequences: 28952
Number of extensions: 143306
Number of successful extensions: 345
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)