Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1087
         (779 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    60   5e-08
UniRef50_Q41HJ5 Cluster: Major facilitator superfamily MFS_1; n=...    34   4.6  
UniRef50_Q69P50 Cluster: Streptococcal hemagglutinin-like protei...    34   4.6  
UniRef50_Q8WQJ4 Cluster: Raft-like protein; n=3; Oligohymenophor...    33   6.1  
UniRef50_A0CY93 Cluster: Chromosome undetermined scaffold_31, wh...    33   6.1  
UniRef50_UPI00006CB10C Cluster: cyclic nucleotide-binding domain...    33   8.0  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 60.5 bits (140), Expect = 5e-08
 Identities = 36/69 (52%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
 Frame = -3

Query: 702  YSLLEG-CSE*LF*IIS---FYDTNDQH*SIFHLYYLEPLCSSKVCYQVSFVLRTIRLWN 535
            Y +  G CSE LF +I    FY    +H S  H YYLEPL SS V +Q SF+ RTIRLWN
Sbjct: 884  YRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWN 943

Query: 534  EPSKTVFSD 508
            E   TVF +
Sbjct: 944  ELPSTVFPE 952


>UniRef50_Q41HJ5 Cluster: Major facilitator superfamily MFS_1; n=2;
           Bacillaceae|Rep: Major facilitator superfamily MFS_1 -
           Exiguobacterium sibiricum 255-15
          Length = 402

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 23/97 (23%), Positives = 47/97 (48%)
 Frame = -2

Query: 595 VLIQSLLPGIFCAKNHSALE*AFQNSVFRRYNMSTSAITWTGVLRVELIWSDQHIGLLPQ 416
           VLI +LLP IF       +   F+ S   RY   +S +  T VL +  ++  + + ++P 
Sbjct: 56  VLILTLLPRIFLMVFGGVIADRFKKSSILRY---SSLLRLTFVLLLLSVYHLELLTIVPL 112

Query: 415 VVLKICFSCLFGFLTLP*RTIKKMVCNSDEVQRRNAL 305
            +    F C+  F +    ++  ++ + D++ R N++
Sbjct: 113 ALFAFTFGCIDAFFSPASASLLPLLVSKDDLTRANSI 149


>UniRef50_Q69P50 Cluster: Streptococcal hemagglutinin-like protein;
           n=5; Oryza sativa|Rep: Streptococcal hemagglutinin-like
           protein - Oryza sativa subsp. japonica (Rice)
          Length = 579

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +2

Query: 443 RPDKLHSQYSSPRYSARRHVIASENTVLEGSFQSRMVLSTKDT 571
           RP    S+ S+P   A R V    NTV EG   SR + ST++T
Sbjct: 86  RPSTPSSRVSTPSTPASRSVTPVRNTVTEGHKSSRRITSTRNT 128


>UniRef50_Q8WQJ4 Cluster: Raft-like protein; n=3;
           Oligohymenophorea|Rep: Raft-like protein - Tetrahymena
           thermophila
          Length = 434

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 21/85 (24%), Positives = 43/85 (50%)
 Frame = +2

Query: 221 LLTPKFIPERKLI*IVANLFVPIRFGISQSIPSLNFIRVADHFLYSPLRQSQKAKKTRKA 400
           L+ P+F  E  L+ +V+ +F PI   ++   PSL    + D F    +R +Q   K   +
Sbjct: 335 LIVPQF--ETPLLGLVSAVFPPILKELAP--PSLELFDLDDEFASEKVRLAQLTNKCNNS 390

Query: 401 NFKNYLRQKSNMLVRPDKLHSQYSS 475
               Y+++  ++L   DK+ +++ +
Sbjct: 391 ELDYYIKESGDILGVTDKVKNKHDA 415


>UniRef50_A0CY93 Cluster: Chromosome undetermined scaffold_31, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_31,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 520

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +2

Query: 323 NFIRVADHFLYSPLRQSQ----KAKKTRKANFKNYLRQKSN-MLVRPDKLHSQYSS 475
           NFI+  D   Y+P+ Q Q      KK +K       R KSN +L+R + LHS+  S
Sbjct: 216 NFIKENDKQQYAPIEQQQSQHDSIKKEKKRTINYMTRNKSNTVLLRSETLHSRSQS 271


>UniRef50_UPI00006CB10C Cluster: cyclic nucleotide-binding domain
            containing protein; n=1; Tetrahymena thermophila
            SB210|Rep: cyclic nucleotide-binding domain containing
            protein - Tetrahymena thermophila SB210
          Length = 1140

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +2

Query: 299  ISQSI-PSLNF--IRVADHFLYSPLRQSQKAKKTRKANFKNYLRQKSNMLVRPDKLHSQY 469
            I QS  PSL F  +++  H  Y+  R+ Q  +K RK    NYL +     +  DK++S+Y
Sbjct: 1056 IDQSFKPSLAFSKLQINQHIDYNETRK-QVLRKMRKFKQINYLNELKKSKIDQDKINSEY 1114

Query: 470  S 472
            S
Sbjct: 1115 S 1115


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 691,308,953
Number of Sequences: 1657284
Number of extensions: 12780187
Number of successful extensions: 28107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28100
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)