BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1087 (779 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 29 0.57 SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 28 1.3 SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 27 3.0 SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 26 7.0 SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 25 9.2 SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 9.2 >SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 972 Score = 29.5 bits (63), Expect = 0.57 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Frame = -1 Query: 617 IYTIWNHCAHPKSVTRYL-LC---*EPFGFGMSLPKQCF 513 IYTIW HC S+ + LC E +G+G S +C+ Sbjct: 732 IYTIWTHCTDMDSMDNCVYLCIQKFESYGWGASSEMECY 770 >SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1588 Score = 28.3 bits (60), Expect = 1.3 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +2 Query: 224 LTPKFIPERKLI*IVANLFVPIRFGISQSIPSLNFIRVADHFL 352 L+P FI E+ I + + +PI IS I L F++ ++ F+ Sbjct: 563 LSPSFIQEKPETLIKSKILLPISMLISNGIQVLTFVQNSNEFV 605 >SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces pombe|chr 1|||Manual Length = 558 Score = 27.1 bits (57), Expect = 3.0 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Frame = +2 Query: 221 LLTPKFIPERKLI*I--VANLFVPIRFGIS-QSIPSLNFIRVADHFLYSPLRQSQKAKKT 391 L+ + ERKL + N+F +++ +S S+PS F +A HF + + + + + + Sbjct: 242 LIISSNVAERKLPWFPNILNVFNLVKYVLSIHSVPSRTFFEMASHFSNNKMHKERLQEFS 301 Query: 392 RKANFKNY 415 N +Y Sbjct: 302 SYKNIDDY 309 >SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 335 Score = 25.8 bits (54), Expect = 7.0 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +1 Query: 181 KKTPEKYNLSSKIFTYAKIYTGAEVD 258 K+ ++Y L KI +YA +Y G +D Sbjct: 105 KRNQQQYGLPMKIVSYADLYDGWTMD 130 >SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1010 Score = 25.4 bits (53), Expect = 9.2 Identities = 14/45 (31%), Positives = 20/45 (44%) Frame = +2 Query: 404 FKNYLRQKSNMLVRPDKLHSQYSSPRYSARRHVIASENTVLEGSF 538 F+ L KSN D+ HS+ P Y+ R + A +L F Sbjct: 918 FRRGLEGKSNHDHSKDRRHSRARKPAYADRNQLKAEAGILLASMF 962 >SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc1|Schizosaccharomyces pombe|chr 2|||Manual Length = 934 Score = 25.4 bits (53), Expect = 9.2 Identities = 8/21 (38%), Positives = 13/21 (61%) Frame = +3 Query: 576 NRLWMSTVVPDSIDEICSNAG 638 +++W S P S+ +IC N G Sbjct: 358 SQIWTSKYAPTSLKDICGNKG 378 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,989,086 Number of Sequences: 5004 Number of extensions: 59303 Number of successful extensions: 157 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 153 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 157 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 377352472 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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