Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1087
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    29   0.57 
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    28   1.3  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    27   3.0  
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ...    26   7.0  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    25   9.2  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   9.2  

>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -1

Query: 617 IYTIWNHCAHPKSVTRYL-LC---*EPFGFGMSLPKQCF 513
           IYTIW HC    S+   + LC    E +G+G S   +C+
Sbjct: 732 IYTIWTHCTDMDSMDNCVYLCIQKFESYGWGASSEMECY 770


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 224 LTPKFIPERKLI*IVANLFVPIRFGISQSIPSLNFIRVADHFL 352
           L+P FI E+    I + + +PI   IS  I  L F++ ++ F+
Sbjct: 563 LSPSFIQEKPETLIKSKILLPISMLISNGIQVLTFVQNSNEFV 605


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +2

Query: 221 LLTPKFIPERKLI*I--VANLFVPIRFGIS-QSIPSLNFIRVADHFLYSPLRQSQKAKKT 391
           L+    + ERKL     + N+F  +++ +S  S+PS  F  +A HF  + + + +  + +
Sbjct: 242 LIISSNVAERKLPWFPNILNVFNLVKYVLSIHSVPSRTFFEMASHFSNNKMHKERLQEFS 301

Query: 392 RKANFKNY 415
              N  +Y
Sbjct: 302 SYKNIDDY 309


>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 181 KKTPEKYNLSSKIFTYAKIYTGAEVD 258
           K+  ++Y L  KI +YA +Y G  +D
Sbjct: 105 KRNQQQYGLPMKIVSYADLYDGWTMD 130


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 404  FKNYLRQKSNMLVRPDKLHSQYSSPRYSARRHVIASENTVLEGSF 538
            F+  L  KSN     D+ HS+   P Y+ R  + A    +L   F
Sbjct: 918  FRRGLEGKSNHDHSKDRRHSRARKPAYADRNQLKAEAGILLASMF 962


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 576 NRLWMSTVVPDSIDEICSNAG 638
           +++W S   P S+ +IC N G
Sbjct: 358 SQIWTSKYAPTSLKDICGNKG 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,086
Number of Sequences: 5004
Number of extensions: 59303
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)