Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1087
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0161 - 15232074-15232139,15232299-15232406,15233417-152335...    34   0.15 
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438...    30   2.4  

>09_04_0161 -
           15232074-15232139,15232299-15232406,15233417-15233506,
           15233617-15233733,15234408-15234527,15234930-15236168
          Length = 579

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +2

Query: 443 RPDKLHSQYSSPRYSARRHVIASENTVLEGSFQSRMVLSTKDT 571
           RP    S+ S+P   A R V    NTV EG   SR + ST++T
Sbjct: 86  RPSTPSSRVSTPSTPASRSVTPVRNTVTEGHKSSRRITSTRNT 128


>03_02_0838 +
           11641484-11642030,11643614-11643650,11643784-11643841,
           11646176-11646265,11646796-11646913,11648093-11648277,
           11648330-11648455,11648578-11648634,11648741-11648821,
           11649068-11649102,11649265-11649354,11649443-11649599,
           11649785-11649901
          Length = 565

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 15  LLSGSRFRSGGRFCEHSSC 71
           LL G+ FR  G++CEH+ C
Sbjct: 169 LLVGNSFRGSGKYCEHAVC 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,846,371
Number of Sequences: 37544
Number of extensions: 326234
Number of successful extensions: 665
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)