Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1087
         (779 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070535-1|AAL48006.1|  428|Drosophila melanogaster LD05179p pro...    29   9.5  
AL021728-7|CAA16816.1|  415|Drosophila melanogaster EG:95B7.3 pr...    29   9.5  
AE014298-458|AAF45820.2|  428|Drosophila melanogaster CG2713-PA ...    29   9.5  

>AY070535-1|AAL48006.1|  428|Drosophila melanogaster LD05179p
           protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +2

Query: 263 IVANLFVPIRFGISQSIPSLNFIRVADHFLYSPLRQSQKAKKTRKANF-KNYLRQKSNML 439
           + A  +    FG  +  P  N   + D F + PL Q    +  +  ++ +  +++ S   
Sbjct: 157 VAAGFWAVYEFGKPEVDP--NGQPIEDEFTHKPLVQQYLQRMWKSIHYYQRMIQEPSRAK 214

Query: 440 VRPDKLHSQYSSPRYS 487
           + PD L   Y  PRY+
Sbjct: 215 LLPDPLKPPYVQPRYT 230


>AL021728-7|CAA16816.1|  415|Drosophila melanogaster EG:95B7.3
           protein.
          Length = 415

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +2

Query: 263 IVANLFVPIRFGISQSIPSLNFIRVADHFLYSPLRQSQKAKKTRKANF-KNYLRQKSNML 439
           + A  +    FG  +  P  N   + D F + PL Q    +  +  ++ +  +++ S   
Sbjct: 157 VAAGFWAVYEFGKPEVDP--NGQPIEDEFTHKPLVQQYLQRMWKSIHYYQRMIQEPSRAK 214

Query: 440 VRPDKLHSQYSSPRYS 487
           + PD L   Y  PRY+
Sbjct: 215 LLPDPLKPPYVQPRYT 230


>AE014298-458|AAF45820.2|  428|Drosophila melanogaster CG2713-PA
           protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +2

Query: 263 IVANLFVPIRFGISQSIPSLNFIRVADHFLYSPLRQSQKAKKTRKANF-KNYLRQKSNML 439
           + A  +    FG  +  P  N   + D F + PL Q    +  +  ++ +  +++ S   
Sbjct: 157 VAAGFWAVYEFGKPEVDP--NGQPIEDEFTHKPLVQQYLQRMWKSIHYYQRMIQEPSRAK 214

Query: 440 VRPDKLHSQYSSPRYS 487
           + PD L   Y  PRY+
Sbjct: 215 LLPDPLKPPYVQPRYT 230


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,241,130
Number of Sequences: 53049
Number of extensions: 565555
Number of successful extensions: 1145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3623012976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)