Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1087
(779 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40948-4|AAA81730.2| 517|Caenorhabditis elegans Hypothetical pr... 31 1.2
AY849796-1|AAW34234.1| 517|Caenorhabditis elegans acetylcholine... 31 1.2
U64833-4|AAB04817.1| 380|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z82080-2|CAB04951.1| 428|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 28 8.6
U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical pr... 28 8.6
>U40948-4|AAA81730.2| 517|Caenorhabditis elegans Hypothetical
protein F55D10.5 protein.
Length = 517
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 212 VKFLLTPKFIPERKLI*IVANLFVPIRFG-ISQSIPSLNFIRVAD 343
+ F L PK IP R ++ + + L + +FG I +++P +++++ D
Sbjct: 294 ISFCLGPKMIPARTMLGVNSLLALTFQFGNIMRNLPRVSYVKALD 338
>AY849796-1|AAW34234.1| 517|Caenorhabditis elegans
acetylcholine-gated chloride channelsubunit ACC-3
protein.
Length = 517
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 212 VKFLLTPKFIPERKLI*IVANLFVPIRFG-ISQSIPSLNFIRVAD 343
+ F L PK IP R ++ + + L + +FG I +++P +++++ D
Sbjct: 294 ISFCLGPKMIPARTMLGVNSLLALTFQFGNIMRNLPRVSYVKALD 338
>U64833-4|AAB04817.1| 380|Caenorhabditis elegans Hypothetical
protein B0507.7 protein.
Length = 380
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 377 KAKKTRKANFKNYLRQKSNMLVRPDKLHS---QYSSPRYSARRHVIASENTVLEGSFQSR 547
+AK++ F N +Q+ N+L KL S H I++ENTVLE + Q +
Sbjct: 81 RAKQSLDDQF-NLFKQQCNILCSKYKLFECEFNISETLNIQESHFISNENTVLEKNSQEK 139
Query: 548 MVLSTKD 568
L +D
Sbjct: 140 KKLEKQD 146
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +2
Query: 344 HFLYSPLRQSQKAKKTRKANFKNYLRQKSNML-VRPDKLHSQYSSPRYSARRHVIASENT 520
HF ++PL S + +K + R KSN + K +S S H E
Sbjct: 4270 HFSWTPLHMSPQPEKMSFLARLGFKRDKSNKKDKKKRKKGENETSGETSDSEHDEKREFA 4329
Query: 521 VLEGSFQSRMVLSTKDTW*QTLD 589
++E +S +T TW +T D
Sbjct: 4330 IVEFEPESGQPYTTVSTWQETSD 4352
>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +2
Query: 344 HFLYSPLRQSQKAKKTRKANFKNYLRQKSNML-VRPDKLHSQYSSPRYSARRHVIASENT 520
HF ++PL S + +K + R KSN + K +S S H E
Sbjct: 4259 HFSWTPLHMSPQPEKMSFLARLGFKRDKSNKKDKKKRKKGENETSGETSDSEHDEKREFA 4318
Query: 521 VLEGSFQSRMVLSTKDTW*QTLD 589
++E +S +T TW +T D
Sbjct: 4319 IVEFEPESGQPYTTVSTWQETSD 4341
>Z82080-2|CAB04951.1| 428|Caenorhabditis elegans Hypothetical
protein W09G3.2 protein.
Length = 428
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 362 LRQSQKAKKTRKANFKNYLRQKSNMLVRPDKLHSQYSSPRYS 487
+RQ Q+A+KT + ++ + Q + R D++H ++ R S
Sbjct: 98 IRQVQEARKTVERITQSEIEQLDKITTRADRIHEEFEVTRDS 139
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +2
Query: 344 HFLYSPLRQSQKAKKTRKANFKNYLRQKSNML-VRPDKLHSQYSSPRYSARRHVIASENT 520
HF ++PL S + +K + R KSN + K +S S H E
Sbjct: 4270 HFSWTPLHMSPQPEKMSFLARLGFKRDKSNKKDKKKRKKGENETSGETSDSEHDEKREFA 4329
Query: 521 VLEGSFQSRMVLSTKDTW*QTLD 589
++E +S +T TW +T D
Sbjct: 4330 IVEFEPESGQPYTTVSTWQETSD 4352
>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +2
Query: 344 HFLYSPLRQSQKAKKTRKANFKNYLRQKSNML-VRPDKLHSQYSSPRYSARRHVIASENT 520
HF ++PL S + +K + R KSN + K +S S H E
Sbjct: 4259 HFSWTPLHMSPQPEKMSFLARLGFKRDKSNKKDKKKRKKGENETSGETSDSEHDEKREFA 4318
Query: 521 VLEGSFQSRMVLSTKDTW*QTLD 589
++E +S +T TW +T D
Sbjct: 4319 IVEFEPESGQPYTTVSTWQETSD 4341
>U12965-3|AAZ32811.1| 980|Caenorhabditis elegans Hypothetical
protein F23F12.8 protein.
Length = 980
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 614 YTIWNHCAHPKSVTRYLLC*EPFG-FGMSLPKQCFPTL 504
Y + + CAHP+S + YL C +G G + C TL
Sbjct: 698 YDVDSFCAHPRSPSMYLQCAPLYGRLGRWTERYCPDTL 735
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,073,491
Number of Sequences: 27780
Number of extensions: 311930
Number of successful extensions: 709
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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