Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1087
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22860.1 68416.m02882 eukaryotic translation initiation facto...    30   1.5  
At4g16800.1 68417.m02537 enoyl-CoA hydratase, putative similar t...    29   2.6  
At3g13772.1 68416.m01738 endomembrane protein 70, putative TM4 f...    29   4.6  

>At3g22860.1 68416.m02882 eukaryotic translation initiation factor 3
           subunit 8, putative / eIF3c, putative similar to
           eukaryotic translation initiation factor 3 subunit 8
           (eIF3 p110) [Arabidopsis thaliana] SWISS-PROT:O49160
          Length = 800

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +2

Query: 467 YSSPRYSARRHVIASENTVLEGSFQSRM-VLSTKDTW 574
           +++P  + R HVIA+   +++G+FQ    VL++ D W
Sbjct: 610 FTAPPENVRVHVIAATRALIKGNFQEAFSVLNSLDIW 646


>At4g16800.1 68417.m02537 enoyl-CoA hydratase, putative similar to
           AU-binding protein/Enoyl-CoA hydratase [Homo sapiens]
           GI:780241, [Mus musculus]GI:6840920; contains Pfam
           profile PF00378 enoyl-CoA hydratase/isomerase family
           protein
          Length = 229

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 634 ALEHISSILSGTTVLIQSLLPGIFCA 557
           A E I    S   V+I+SL+PG+FCA
Sbjct: 8   AFESIHQDNSARVVMIRSLVPGVFCA 33


>At3g13772.1 68416.m01738 endomembrane protein 70, putative TM4
           family;
          Length = 641

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
 Frame = -2

Query: 601 TTVLIQSLLPGIFCAKNHSALE*AFQNSVFRRYNMSTSAITWTGVLRV------ELIWSD 440
           T +++  +  GIF   + S L   F+ + ++R  + T A  + G+L         LIW +
Sbjct: 379 TAMVLLWVFMGIFAGYSSSRLHKMFKGNKWKRMTLKT-AFMFPGILFAIFFVLNALIWGE 437

Query: 439 QHIGLLPQVVLKICFSCLFG 380
           Q  G +P   +   F   FG
Sbjct: 438 QSSGAIPFGTMFALFCLWFG 457


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,051,770
Number of Sequences: 28952
Number of extensions: 285810
Number of successful extensions: 669
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)