Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1086
(516 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P18077 Cluster: 60S ribosomal protein L35a; n=47; Eutel... 101 1e-20
UniRef50_UPI0001552EFF Cluster: PREDICTED: similar to ribosomal ... 98 1e-19
UniRef50_Q86E43 Cluster: Clone ZZZ247 mRNA sequence; n=4; Eukary... 97 3e-19
UniRef50_Q9VNB9 Cluster: CG2099-PA; n=21; Eukaryota|Rep: CG2099-... 95 8e-19
UniRef50_Q0PXZ5 Cluster: Putative ribosomal protein L35Ae; n=1; ... 86 5e-16
UniRef50_Q8W1C9 Cluster: Ribosomal protein L35A; n=13; Eukaryota... 82 8e-15
UniRef50_P49180 Cluster: 60S ribosomal protein L35a; n=4; Eukary... 81 1e-14
UniRef50_Q4WX73 Cluster: 60S ribosomal protein L35Ae; n=4; Peziz... 75 1e-12
UniRef50_P41056 Cluster: 60S ribosomal protein L33-B; n=42; Euka... 73 5e-12
UniRef50_Q8I7D7 Cluster: Putative 60S ribosomal protein L35a; n=... 71 1e-11
UniRef50_A4S1R2 Cluster: Ribosomal protein L35a, component of cy... 69 6e-11
UniRef50_Q4QHL3 Cluster: Ribosomal protein l35a, putative; n=6; ... 69 8e-11
UniRef50_A5K584 Cluster: 60S ribosomal protein L33-B, putative; ... 68 1e-10
UniRef50_Q5KFG9 Cluster: 60s ribosomal protein l33-b, putative; ... 67 3e-10
UniRef50_A2DSF3 Cluster: Ribosomal protein L35Ae, putative; n=4;... 66 4e-10
UniRef50_Q5GAS3 Cluster: Rpl35A; n=1; Zea mays|Rep: Rpl35A - Zea... 64 1e-09
UniRef50_A0CFU8 Cluster: Chromosome undetermined scaffold_177, w... 60 2e-08
UniRef50_UPI0000D9A2D5 Cluster: PREDICTED: similar to ribosomal ... 59 5e-08
UniRef50_Q7QXX7 Cluster: GLP_479_47445_47074; n=1; Giardia lambl... 58 1e-07
UniRef50_Q55BN7 Cluster: Ribosomal protein L35a; n=1; Dictyostel... 58 1e-07
UniRef50_A6R3W0 Cluster: Putative uncharacterized protein; n=2; ... 46 7e-04
UniRef50_Q8SSF3 Cluster: 60S RIBOSOMAL PROTEIN L35A; n=1; Enceph... 42 0.011
UniRef50_Q9V1P2 Cluster: 50S ribosomal protein L35Ae; n=5; Therm... 41 0.015
UniRef50_Q8TYY6 Cluster: 50S ribosomal protein L35Ae; n=2; Archa... 40 0.034
UniRef50_A1RX00 Cluster: Ribosomal protein L35Ae; n=1; Thermofil... 39 0.078
UniRef50_A5BSA9 Cluster: Putative uncharacterized protein; n=1; ... 38 0.14
UniRef50_Q012X7 Cluster: Phytoene/squalene synthetase; n=2; Ostr... 38 0.18
UniRef50_A2BL64 Cluster: 50S ribosomal protein L35Ae; n=2; Desul... 37 0.31
UniRef50_Q3T2M5 Cluster: Cassette chromosome recombinase C; n=15... 35 1.3
UniRef50_Q98SD1 Cluster: 60S ribosomal protein 35A; n=1; Guillar... 34 2.2
UniRef50_A0MPB7 Cluster: C6 zinc finger protein; n=1; Gibberella... 33 3.9
UniRef50_A4ALM4 Cluster: Phage-related integrase; n=1; marine ac... 33 5.1
UniRef50_Q5QXQ3 Cluster: Uncharacterized conserved membrane prot... 32 8.9
UniRef50_Q0VN96 Cluster: Putative uncharacterized protein; n=1; ... 32 8.9
UniRef50_A3U2M0 Cluster: Putative lipid A biosynthesis lauroyl a... 32 8.9
UniRef50_P32370 Cluster: NADH-dependent flavin oxidoreductase; n... 32 8.9
>UniRef50_P18077 Cluster: 60S ribosomal protein L35a; n=47;
Euteleostomi|Rep: 60S ribosomal protein L35a - Homo
sapiens (Human)
Length = 110
Score = 101 bits (241), Expect = 1e-20
Identities = 48/65 (73%), Positives = 52/65 (80%)
Frame = +2
Query: 257 YVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVML 436
YVY+AK T PGG K K R IWGKVTR HGNSG VRAKF+SNLPA+A+GHRIRVML
Sbjct: 49 YVYKAKNNTVTPGG---KPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVML 105
Query: 437 YPSRI 451
YPSRI
Sbjct: 106 YPSRI 110
Score = 69.3 bits (162), Expect = 5e-11
Identities = 29/46 (63%), Positives = 37/46 (80%)
Frame = +3
Query: 120 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCS 257
GRL++KA+F GYKRGLRNQ E+TALLK+EG R++ FY GK C+
Sbjct: 3 GRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCA 48
>UniRef50_UPI0001552EFF Cluster: PREDICTED: similar to ribosomal
protein L35a; n=7; Euarchontoglires|Rep: PREDICTED:
similar to ribosomal protein L35a - Mus musculus
Length = 86
Score = 97.9 bits (233), Expect = 1e-19
Identities = 47/65 (72%), Positives = 51/65 (78%)
Frame = +2
Query: 257 YVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVML 436
YVY+AK T PGG K K R IWGKVTR HGNS VRAKF+SNLPA+A+GHRIRVML
Sbjct: 25 YVYKAKNNTMTPGG---KLNKTRMIWGKVTRAHGNSSMVRAKFRSNLPAKAIGHRIRVML 81
Query: 437 YPSRI 451
YPSRI
Sbjct: 82 YPSRI 86
>UniRef50_Q86E43 Cluster: Clone ZZZ247 mRNA sequence; n=4;
Eukaryota|Rep: Clone ZZZ247 mRNA sequence - Schistosoma
japonicum (Blood fluke)
Length = 128
Score = 96.7 bits (230), Expect = 3e-19
Identities = 45/66 (68%), Positives = 52/66 (78%)
Frame = +2
Query: 254 LYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVM 433
+YVYRA+K+ P R K TK+R IWGK+ RPHGNSG VRA+FK NLPA AMG RIRVM
Sbjct: 65 VYVYRAEKKKVFPR--RQKPTKIRVIWGKIMRPHGNSGIVRARFKHNLPASAMGKRIRVM 122
Query: 434 LYPSRI 451
LYPSR+
Sbjct: 123 LYPSRV 128
Score = 74.1 bits (174), Expect = 2e-12
Identities = 32/60 (53%), Positives = 39/60 (65%)
Frame = +3
Query: 114 RHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCSMCTELRRGHQFP 293
R GRLY KA FTGY+RGLRNQHE+TALL+++G +R FY GK C + FP
Sbjct: 18 RPGRLYVKATFTGYRRGLRNQHESTALLRIDGVTERKSTEFYLGKRCVYVYRAEKKKVFP 77
>UniRef50_Q9VNB9 Cluster: CG2099-PA; n=21; Eukaryota|Rep: CG2099-PA
- Drosophila melanogaster (Fruit fly)
Length = 157
Score = 95.1 bits (226), Expect = 8e-19
Identities = 41/66 (62%), Positives = 54/66 (81%)
Frame = +2
Query: 254 LYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVM 433
+YVY+A+ + +P P +KT++RA+WGKVTR HGN+G+VRA+F NLP AMGHRIR+M
Sbjct: 93 VYVYKAETKKCVPQHPE-RKTRVRAVWGKVTRIHGNTGAVRARFNRNLPGHAMGHRIRIM 151
Query: 434 LYPSRI 451
LYPSRI
Sbjct: 152 LYPSRI 157
Score = 81.4 bits (192), Expect = 1e-14
Identities = 37/66 (56%), Positives = 44/66 (66%)
Frame = +3
Query: 114 RHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCSMCTELRRGHQFP 293
RHGRL+AKAVFTGYKRGLRNQHEN A+LK+EGA+ + FY GK C + P
Sbjct: 46 RHGRLFAKAVFTGYKRGLRNQHENQAILKIEGARRKEHGSFYVGKRCVYVYKAETKKCVP 105
Query: 294 EVPVAK 311
+ P K
Sbjct: 106 QHPERK 111
>UniRef50_Q0PXZ5 Cluster: Putative ribosomal protein L35Ae; n=1;
Diaphorina citri|Rep: Putative ribosomal protein L35Ae -
Diaphorina citri (Asian citrus psyllid)
Length = 172
Score = 85.8 bits (203), Expect = 5e-16
Identities = 40/66 (60%), Positives = 51/66 (77%)
Frame = +2
Query: 254 LYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVM 433
+++Y+AK + P R K++LRAIWGKVTRPHG+SGSVRAKF NLPA MG ++R+M
Sbjct: 109 VFLYKAKTKELKPHSKR--KSRLRAIWGKVTRPHGSSGSVRAKFHRNLPAIYMGRKVRIM 166
Query: 434 LYPSRI 451
LYPS I
Sbjct: 167 LYPSNI 172
Score = 73.3 bits (172), Expect = 3e-12
Identities = 31/52 (59%), Positives = 38/52 (73%)
Frame = +3
Query: 99 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHC 254
K + RHGRLYA+A+FTG+KRG RNQH NT+LL +E + DA FY GK C
Sbjct: 57 KRLRLRHGRLYARAIFTGFKRGQRNQHPNTSLLAIEKCNTKEDARFYVGKRC 108
>UniRef50_Q8W1C9 Cluster: Ribosomal protein L35A; n=13;
Eukaryota|Rep: Ribosomal protein L35A - Zea mays (Maize)
Length = 112
Score = 81.8 bits (193), Expect = 8e-15
Identities = 37/67 (55%), Positives = 49/67 (73%)
Frame = +2
Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430
+ Y+Y+AK ++ +T+ R IWGKVTRPHGNSG VRAKFKSNLP ++MG ++RV
Sbjct: 54 MAYIYKAKTKS--------SETRYRCIWGKVTRPHGNSGVVRAKFKSNLPPESMGRKVRV 105
Query: 431 MLYPSRI 451
+YPS I
Sbjct: 106 FMYPSSI 112
Score = 48.8 bits (111), Expect = 7e-05
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +3
Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
RLY + GYKR NQ+E T+L+++EG + D +YAGK
Sbjct: 11 RLYVRGTILGYKRSKSNQYETTSLVQIEGVNTKEDVAWYAGK 52
>UniRef50_P49180 Cluster: 60S ribosomal protein L35a; n=4;
Eukaryota|Rep: 60S ribosomal protein L35a -
Caenorhabditis elegans
Length = 124
Score = 81.4 bits (192), Expect = 1e-14
Identities = 37/67 (55%), Positives = 49/67 (73%)
Frame = +2
Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430
++Y+Y+A +T G T+ RAIWGK+TRPHGN+G+VRAKF N+P A+G RIRV
Sbjct: 60 VVYLYKAHNKTLKTG--HTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRV 117
Query: 431 MLYPSRI 451
+LYPS I
Sbjct: 118 LLYPSNI 124
Score = 71.7 bits (168), Expect = 9e-12
Identities = 32/51 (62%), Positives = 40/51 (78%)
Frame = +3
Query: 96 RKASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
R+ S P GRLY KA+FTG+KRGLR Q E+T+LLK+EG ++ DA FYAGK
Sbjct: 8 RRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGK 58
>UniRef50_Q4WX73 Cluster: 60S ribosomal protein L35Ae; n=4;
Pezizomycotina|Rep: 60S ribosomal protein L35Ae -
Aspergillus fumigatus (Sartorya fumigata)
Length = 119
Score = 74.5 bits (175), Expect = 1e-12
Identities = 37/65 (56%), Positives = 46/65 (70%)
Frame = +2
Query: 257 YVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVML 436
+VYRAK+ RG + +R IWGKVTRPHGNSG VRA+F+ NLP ++ G +RVML
Sbjct: 63 FVYRAKREV------RG--SNIRVIWGKVTRPHGNSGVVRAQFRHNLPPKSFGATVRVML 114
Query: 437 YPSRI 451
YPS I
Sbjct: 115 YPSNI 119
>UniRef50_P41056 Cluster: 60S ribosomal protein L33-B; n=42;
Eukaryota|Rep: 60S ribosomal protein L33-B -
Saccharomyces cerevisiae (Baker's yeast)
Length = 107
Score = 72.5 bits (170), Expect = 5e-12
Identities = 36/67 (53%), Positives = 45/67 (67%)
Frame = +2
Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430
+ YVYRA K RG +K+R +WGKVTR HGNSG VRA F++NLPA+ G +R+
Sbjct: 49 IAYVYRASKEV------RG--SKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRI 100
Query: 431 MLYPSRI 451
LYPS I
Sbjct: 101 FLYPSNI 107
Score = 38.3 bits (85), Expect = 0.10
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +3
Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
RLY K Y+R R + N +L+K+EG +A FY GK
Sbjct: 6 RLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGK 47
>UniRef50_Q8I7D7 Cluster: Putative 60S ribosomal protein L35a; n=1;
Ciona intestinalis|Rep: Putative 60S ribosomal protein
L35a - Ciona intestinalis (Transparent sea squirt)
Length = 122
Score = 71.3 bits (167), Expect = 1e-11
Identities = 31/57 (54%), Positives = 41/57 (71%)
Frame = +3
Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCSMCTELRRGHQFP 293
RL+ KAVFTGY RGLRNQHE+TALL++EG ++ D FY GK C+ + +R + P
Sbjct: 4 RLWCKAVFTGYTRGLRNQHEHTALLRIEGVTNKEDTDFYLGKKCAYVYKAKRKTKTP 60
Score = 70.9 bits (166), Expect = 2e-11
Identities = 33/52 (63%), Positives = 40/52 (76%)
Frame = +2
Query: 257 YVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAM 412
YVY+AK++T P RG+ K R IWGKVTR HGNSG VRA FK+NLPA+A+
Sbjct: 49 YVYKAKRKTKTP---RGEPNKTRVIWGKVTRSHGNSGVVRATFKTNLPAKAI 97
>UniRef50_A4S1R2 Cluster: Ribosomal protein L35a, component of
cytosolic 80S ribosome and 60S large subunit; n=1;
Ostreococcus lucimarinus CCE9901|Rep: Ribosomal protein
L35a, component of cytosolic 80S ribosome and 60S large
subunit - Ostreococcus lucimarinus CCE9901
Length = 109
Score = 68.9 bits (161), Expect = 6e-11
Identities = 35/67 (52%), Positives = 44/67 (65%)
Frame = +2
Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430
L YVY+AK + + T R IWGKV R HG SG VRAKFKS+LP+ ++G ++R
Sbjct: 51 LCYVYKAKTKK--------QGTAYRTIWGKVMRAHGTSGVVRAKFKSHLPSNSIGGKVRC 102
Query: 431 MLYPSRI 451
MLYPS I
Sbjct: 103 MLYPSNI 109
Score = 47.6 bits (108), Expect = 2e-04
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +3
Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
RLY + + GYKR NQ+ +T+L+K+EG D FY GK
Sbjct: 8 RLYVRGLILGYKRARTNQYNHTSLIKLEGVSDAPSTAFYGGK 49
>UniRef50_Q4QHL3 Cluster: Ribosomal protein l35a, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein l35a, putative -
Leishmania major
Length = 144
Score = 68.5 bits (160), Expect = 8e-11
Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 3/68 (4%)
Frame = +2
Query: 257 YVYRAKK--RTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFK-SNLPAQAMGHRIR 427
YVY KK R +++ RA+WG+VTRPHGN+G +R KF +++PA A+G RIR
Sbjct: 77 YVYHGKKVKRCVRWSKAPARRSTTRALWGRVTRPHGNAGMMRVKFNGASVPASAIGRRIR 136
Query: 428 VMLYPSRI 451
V LYPS+I
Sbjct: 137 VYLYPSQI 144
Score = 48.0 bits (109), Expect = 1e-04
Identities = 21/42 (50%), Positives = 25/42 (59%)
Frame = +3
Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
RLY K GY RGL Q + TAL++VE R DA +Y GK
Sbjct: 32 RLYMKGTLAGYTRGLHGQTKQTALVRVENVNTREDATWYVGK 73
>UniRef50_A5K584 Cluster: 60S ribosomal protein L33-B, putative;
n=5; Plasmodium|Rep: 60S ribosomal protein L33-B,
putative - Plasmodium vivax
Length = 146
Score = 68.1 bits (159), Expect = 1e-10
Identities = 25/45 (55%), Positives = 37/45 (82%)
Frame = +2
Query: 317 KLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 451
K++ IWGKV R HGNSG +RA+F++N+P +A G R+R+++YPS I
Sbjct: 102 KIKCIWGKVCRTHGNSGVIRARFRTNIPPKAFGDRVRILMYPSNI 146
Score = 43.6 bits (98), Expect = 0.003
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = +3
Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCSMCTELRRGH 284
RLY K V GYKR RNQ N L+ + + A FY GK + + H
Sbjct: 45 RLYEKGVILGYKRSQRNQDPNFTLISIRNVHTKKHAQFYVGKKIAYVYRTNKHH 98
>UniRef50_Q5KFG9 Cluster: 60s ribosomal protein l33-b, putative;
n=2; Filobasidiella neoformans|Rep: 60s ribosomal
protein l33-b, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 178
Score = 66.9 bits (156), Expect = 3e-10
Identities = 31/65 (47%), Positives = 47/65 (72%)
Frame = +2
Query: 257 YVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVML 436
YVY+AK+ I G +++R IWG+++R HGNSG+V++KF++NLPA+ G R+ML
Sbjct: 122 YVYKAKRE--ING------SRVRVIWGRISRSHGNSGAVKSKFRTNLPAKTFGASCRIML 173
Query: 437 YPSRI 451
+PS I
Sbjct: 174 FPSNI 178
Score = 43.2 bits (97), Expect = 0.004
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +3
Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCSMCTELRR 278
RLY K G+KRG RN N +LL++EG ++ A Y GK + + +R
Sbjct: 77 RLYIKGRILGHKRGKRNSRPNQSLLQIEGVDNKEAAGHYLGKRVAYVYKAKR 128
>UniRef50_A2DSF3 Cluster: Ribosomal protein L35Ae, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein L35Ae,
putative - Trichomonas vaginalis G3
Length = 102
Score = 66.1 bits (154), Expect = 4e-10
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = +2
Query: 332 WGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 451
WG +T+PHGNSG VRAKF+ NLP Q +G ++RVMLYPS I
Sbjct: 63 WGVITQPHGNSGVVRAKFEKNLPPQMLGKQVRVMLYPSTI 102
Score = 37.9 bits (84), Expect = 0.14
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +3
Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
+L+ A F ++R R N ALL+++G + +A FYAGK
Sbjct: 6 KLFVPATFVSFRRSKRIIKPNQALLEIQGVVSKEEAQFYAGK 47
>UniRef50_Q5GAS3 Cluster: Rpl35A; n=1; Zea mays|Rep: Rpl35A - Zea
mays (Maize)
Length = 139
Score = 64.5 bits (150), Expect = 1e-09
Identities = 30/54 (55%), Positives = 39/54 (72%)
Frame = +2
Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAM 412
+ Y+Y+AK ++ +T+ R IWGKVTRPHGNSG VRAKFKSNLP ++M
Sbjct: 74 MAYIYKAKTKS--------SETRYRCIWGKVTRPHGNSGVVRAKFKSNLPPESM 119
Score = 34.7 bits (76), Expect = 1.3
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 159 RGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
R NQ+E T+L+++EG + D +YAGK
Sbjct: 43 RSKSNQYETTSLVQIEGVNTKEDVAWYAGK 72
>UniRef50_A0CFU8 Cluster: Chromosome undetermined scaffold_177,
whole genome shotgun sequence; n=9; Eukaryota|Rep:
Chromosome undetermined scaffold_177, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 129
Score = 60.5 bits (140), Expect = 2e-08
Identities = 24/45 (53%), Positives = 35/45 (77%)
Frame = +2
Query: 314 TKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSR 448
TK RAIWG++++ HG++G V A+F NLP +A+G +RV LYP+R
Sbjct: 84 TKFRAIWGRISKSHGSNGVVTARFGRNLPPRAIGSTLRVFLYPNR 128
Score = 46.4 bits (105), Expect = 4e-04
Identities = 22/42 (52%), Positives = 28/42 (66%)
Frame = +3
Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
RL+ KAVFTG++R Q+EN ALLK+E D + FY GK
Sbjct: 28 RLWVKAVFTGFRRSKVQQNENQALLKIEHVNDVASSRFYWGK 69
>UniRef50_UPI0000D9A2D5 Cluster: PREDICTED: similar to ribosomal
protein L35a; n=1; Macaca mulatta|Rep: PREDICTED:
similar to ribosomal protein L35a - Macaca mulatta
Length = 80
Score = 59.3 bits (137), Expect = 5e-08
Identities = 26/35 (74%), Positives = 31/35 (88%)
Frame = +2
Query: 347 RPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 451
+ HGNSG VRAKF+SNLPA+A+GH I+VMLYPS I
Sbjct: 46 KAHGNSGMVRAKFQSNLPAKAIGHGIQVMLYPSSI 80
Score = 54.8 bits (126), Expect = 1e-06
Identities = 25/43 (58%), Positives = 31/43 (72%)
Frame = +3
Query: 120 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
GRL++KAVF GYKRG RNQ E+TALLK+E ++ FY K
Sbjct: 3 GRLWSKAVFAGYKRGPRNQREHTALLKIEAVYAGDETEFYLDK 45
>UniRef50_Q7QXX7 Cluster: GLP_479_47445_47074; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_479_47445_47074 - Giardia lamblia
ATCC 50803
Length = 123
Score = 58.0 bits (134), Expect = 1e-07
Identities = 23/36 (63%), Positives = 30/36 (83%)
Frame = +2
Query: 323 RAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430
+ I+GK+ RPHGNSG VRA+F +NLP Q MGH++RV
Sbjct: 59 KPIFGKICRPHGNSGMVRARFYTNLPGQLMGHKVRV 94
Score = 35.5 bits (78), Expect = 0.72
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 120 GRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDR 221
G+ + A+F GY+R Q EN AL+KV G R
Sbjct: 6 GKTFLPAIFVGYQRSRAKQRENVALVKVSGIYTR 39
>UniRef50_Q55BN7 Cluster: Ribosomal protein L35a; n=1; Dictyostelium
discoideum AX4|Rep: Ribosomal protein L35a -
Dictyostelium discoideum AX4
Length = 105
Score = 58.0 bits (134), Expect = 1e-07
Identities = 24/40 (60%), Positives = 31/40 (77%)
Frame = +2
Query: 332 WGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 451
WGK+ + HG+SG V+A+F NLP +AMG +RVMLYPS I
Sbjct: 66 WGKICKTHGSSGVVQARFARNLPPKAMGAPVRVMLYPSNI 105
Score = 48.8 bits (111), Expect = 7e-05
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +3
Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCSMCTELRRGHQFP 293
++Y+K V GY+R Q+ N +L+K+EG R D+ FY GK + +++ + + P
Sbjct: 3 KIYSKGVVLGYRRSQATQYPNISLIKIEGVVSREDSTFYLGKKVCLVSKVSKSAKNP 59
>UniRef50_A6R3W0 Cluster: Putative uncharacterized protein; n=2;
Pezizomycotina|Rep: Putative uncharacterized protein -
Ajellomyces capsulatus NAm1
Length = 102
Score = 45.6 bits (103), Expect = 7e-04
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 117 HG-RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCSMCTELRRGHQFP 293
HG RLY K Y+RG R + NT+L+K+EG +D A FY GK + +R Q
Sbjct: 5 HGHRLYVKGRHLSYQRGKRATNPNTSLIKLEGVEDIKAANFYLGKKVAFVYRAKREVQGS 64
Query: 294 EVPV 305
++ V
Sbjct: 65 KIRV 68
Score = 34.7 bits (76), Expect = 1.3
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Frame = +2
Query: 257 YVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSG----SVRAKFKSNLPA 403
+VYRAK+ + +K+R IWGKVTR HG G +++ +F S P+
Sbjct: 53 FVYRAKREV--------QGSKIRVIWGKVTRTHGQLGRCPCAIQTQFFSQSPS 97
>UniRef50_Q8SSF3 Cluster: 60S RIBOSOMAL PROTEIN L35A; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L35A
- Encephalitozoon cuniculi
Length = 113
Score = 41.5 bits (93), Expect = 0.011
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +2
Query: 329 IWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLY 439
+ G +TR HGNSG+VRA+F NL + +G + V LY
Sbjct: 70 VHGVITRIHGNSGAVRARFTRNLDPKLLGTHVFVKLY 106
Score = 33.9 bits (74), Expect = 2.2
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 138 AVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCSMCTELRRGHQFP 293
A F +KRG R H LLK+ +++A Y G + G ++P
Sbjct: 18 ATFVSFKRGQRRLHPRHVLLKIRNVTSKDEASSYVGNGVVCYKKNNEGERYP 69
>UniRef50_Q9V1P2 Cluster: 50S ribosomal protein L35Ae; n=5;
Thermococcaceae|Rep: 50S ribosomal protein L35Ae -
Pyrococcus abyssi
Length = 87
Score = 41.1 bits (92), Expect = 0.015
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 335 GKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVM 433
GK+ R HG G+VRA+F+ LP QA+G + ++
Sbjct: 55 GKIVRVHGTKGAVRARFEKGLPGQALGDYVEII 87
>UniRef50_Q8TYY6 Cluster: 50S ribosomal protein L35Ae; n=2;
Archaea|Rep: 50S ribosomal protein L35Ae - Methanopyrus
kandleri
Length = 90
Score = 39.9 bits (89), Expect = 0.034
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +2
Query: 323 RAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 424
+ I GKV HGN+G+VR +F+ LP QA+G +
Sbjct: 54 KVIRGKVVDTHGNNGAVRVRFERGLPGQALGTEV 87
>UniRef50_A1RX00 Cluster: Ribosomal protein L35Ae; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L35Ae - Thermofilum
pendens (strain Hrk 5)
Length = 85
Score = 38.7 bits (86), Expect = 0.078
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 335 GKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVM 433
GK+ R HG G V A FK +LP QA+G +++++
Sbjct: 53 GKIVRMHGRRGHVLAYFKRHLPGQAVGTKVKIV 85
>UniRef50_A5BSA9 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 225
Score = 37.9 bits (84), Expect = 0.14
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -3
Query: 412 HSLGREVRLELGSDTARVAMWAGHLAPDSTQL 317
H LGR++ LELGSD V + +G LAP +T++
Sbjct: 60 HGLGRQIGLELGSDNTTVTVRSGDLAPXATKV 91
>UniRef50_Q012X7 Cluster: Phytoene/squalene synthetase; n=2;
Ostreococcus|Rep: Phytoene/squalene synthetase -
Ostreococcus tauri
Length = 437
Score = 37.5 bits (83), Expect = 0.18
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -3
Query: 445 GRIQHHSYSVSHSLGREVRLELGSDTARVAMWAGHLAPDSTQ 320
GR++H S+ + +GR+V LELG A + HLAPD ++
Sbjct: 335 GRVKHASHLTADRVGRQVLLELGPHDAARPVRPSHLAPDRSE 376
>UniRef50_A2BL64 Cluster: 50S ribosomal protein L35Ae; n=2;
Desulfurococcales|Rep: 50S ribosomal protein L35Ae -
Hyperthermus butylicus (strain DSM 5456 / JCM 9403)
Length = 106
Score = 36.7 bits (81), Expect = 0.31
Identities = 19/39 (48%), Positives = 22/39 (56%)
Frame = +2
Query: 335 GKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVMLYPSRI 451
GK+ HG+ G V A FK NLP QA G V +YP I
Sbjct: 61 GKIVHVHGSKGVVIAVFKPNLPGQARGG--NVYIYPKGI 97
>UniRef50_Q3T2M5 Cluster: Cassette chromosome recombinase C; n=15;
Staphylococcus|Rep: Cassette chromosome recombinase C -
Staphylococcus aureus
Length = 559
Score = 34.7 bits (76), Expect = 1.3
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 141 VFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCSMCTE 269
V+ GY R N H+N A+ + G D+ND + GKH ++ +E
Sbjct: 233 VYKGYVRF--NNHQNWAVQRRSGKSDKNDVILVKGKHEAIISE 273
>UniRef50_Q98SD1 Cluster: 60S ribosomal protein 35A; n=1; Guillardia
theta|Rep: 60S ribosomal protein 35A - Guillardia theta
(Cryptomonas phi)
Length = 98
Score = 33.9 bits (74), Expect = 2.2
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 135 KAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCSMC 263
K VF GYKR +RNQ + A +K+ K+ + GK +C
Sbjct: 13 KCVFLGYKRSIRNQKMDKARMKINCQKNIEIHKQFLGKKLKIC 55
>UniRef50_A0MPB7 Cluster: C6 zinc finger protein; n=1; Gibberella
zeae|Rep: C6 zinc finger protein - Gibberella zeae
(Fusarium graminearum)
Length = 411
Score = 33.1 bits (72), Expect = 3.9
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -1
Query: 348 RVTLPQIARSLVFLPRGPPGIGVLFLALY----T*SNACQHKRLHHYGLLL 208
RV LP+IA S FL G I L L+ + + +NA K LHHYG L
Sbjct: 141 RVNLPRIAFSNDFLLHGTLAIAALHLSRFKKNASEANAYMMKALHHYGTAL 191
>UniRef50_A4ALM4 Cluster: Phage-related integrase; n=1; marine
actinobacterium PHSC20C1|Rep: Phage-related integrase -
marine actinobacterium PHSC20C1
Length = 333
Score = 32.7 bits (71), Expect = 5.1
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -3
Query: 442 RIQHHS-YSVSHSLGREVRLELGSDTARVAMWAGHLAPDSTQ 320
R QH S +++ H+ + L+ G+D A +A+W GH +P +TQ
Sbjct: 253 RGQHISPHTLRHATAMHL-LQSGTDLATIALWLGHSSPATTQ 293
>UniRef50_Q5QXQ3 Cluster: Uncharacterized conserved membrane
protein; n=3; Gammaproteobacteria|Rep: Uncharacterized
conserved membrane protein - Idiomarina loihiensis
Length = 345
Score = 31.9 bits (69), Expect = 8.9
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +2
Query: 272 KKRTPIPGGPRGKKTKLRA--IWGKVTRPHGNSGSVRAKFKSNLPAQAMG 415
KK P GP K+ K +WG+++ GN S+R K K+ A G
Sbjct: 261 KKLESQPAGPEEKERKNNPTYVWGEISDAKGNKKSMRVKVKNGYSLTAEG 310
>UniRef50_Q0VN96 Cluster: Putative uncharacterized protein; n=1;
Alcanivorax borkumensis SK2|Rep: Putative
uncharacterized protein - Alcanivorax borkumensis
(strain SK2 / ATCC 700651 / DSM 11573)
Length = 204
Score = 31.9 bits (69), Expect = 8.9
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -3
Query: 400 REVRLELGSDTARVAMWAGHLAPDSTQLGFFAT 302
++VRL LG DT RV H AP +T+L F T
Sbjct: 94 KQVRLALGEDTQRVRRVILHTAPANTELQTFLT 126
>UniRef50_A3U2M0 Cluster: Putative lipid A biosynthesis lauroyl
acyltransferase; n=1; Oceanicola batsensis HTCC2597|Rep:
Putative lipid A biosynthesis lauroyl acyltransferase -
Oceanicola batsensis HTCC2597
Length = 304
Score = 31.9 bits (69), Expect = 8.9
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -1
Query: 447 LEGYSITRILCPIA-WAGRLDLNLARTLPELP 355
L G+ ++RI+ P+A W R+ NLA P+LP
Sbjct: 40 LAGWLVSRIVAPLAGWRRRIRTNLAHAWPDLP 71
>UniRef50_P32370 Cluster: NADH-dependent flavin oxidoreductase; n=2;
Clostridium|Rep: NADH-dependent flavin oxidoreductase -
Eubacterium sp. (strain VPI 12708)
Length = 661
Score = 31.9 bits (69), Expect = 8.9
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 249 HCSMCTELRRGHQFPEVPVAKKPSCVLSGAR*PAHMATLAVSEPSSSLT 395
HC + L R ++FP+VP K ++ GA MA + +E +T
Sbjct: 362 HCHINPRLGREYEFPDVPAEKSKKVLVIGAGPGGMMAAVTAAERGHDVT 410
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 491,079,139
Number of Sequences: 1657284
Number of extensions: 10482571
Number of successful extensions: 28579
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 27642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28566
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -