Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1086
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein L35a|Schizosac...    71   8e-14
SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein L37|S...    69   4e-13
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    25   6.7  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    25   8.9  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   8.9  

>SPCP31B10.08c |rpl35a|rpl33|60S ribosomal protein
           L35a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 108

 Score = 71.3 bits (167), Expect = 8e-14
 Identities = 35/65 (53%), Positives = 44/65 (67%)
 Frame = +2

Query: 257 YVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRVML 436
           YVY++ K        RG  +K+R IWG + RPHGNSG+VRA+F  NLPA+  G  +RVML
Sbjct: 52  YVYKSSKAV------RG--SKIRVIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVML 103

Query: 437 YPSRI 451
           YPS I
Sbjct: 104 YPSNI 108



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 111 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
           P  G RLY KA    ++R     H  T+++K+EG   + +A FY GK
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGK 48


>SPBC1921.01c |rpl3701|rpl37-1, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 68.9 bits (161), Expect = 4e-13
 Identities = 33/67 (49%), Positives = 45/67 (67%)
 Frame = +2

Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430
           + +VY++ K  P+ G      +K+R IWG V+RPHGNSG VRA+F  NLP +  G  +RV
Sbjct: 50  ICFVYKSNK--PVRG------SKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRV 101

Query: 431 MLYPSRI 451
           MLYPS +
Sbjct: 102 MLYPSNV 108



 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 111 PRHG-RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
           P  G RLY KA    ++R     H  T+L+K+EG   + +A FY GK
Sbjct: 2   PAQGHRLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGK 48


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -3

Query: 340 LAPDSTQLGFFATGTSGNWCPLLSSVHIEQCLPA*KTASLRSFAPST 200
           LA + T   +F  G     C   S   +E  LP  +    R+FAPST
Sbjct: 63  LATEKTICKYFQKGN----CKFGSKCALEHVLPDGRKVKTRAFAPST 105


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
 Frame = -2

Query: 266 CTHRAMLASIKDCI-ITVFCSFNLEESGVLVLVA*TTLISCEYGLCVQPAVAGL*CFAKD 90
           C       ++  CI +TV       +  V+ L     + +     CV+    GL    KD
Sbjct: 138 CFFETWTQAVAQCIKVTVIFLAQCVKVTVIFLAQCVKVTAVFLAKCVKVIAVGLYNSKKD 197

Query: 89  LCGLHRSCWSSLGHFFFGCLSFRRFRLRR 3
           L       W  +    FGC+   R  L +
Sbjct: 198 LVVTIWLAWVVICFILFGCVKDGRLNLNK 226


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 345 PAHMATLAVSEPSSSLTSLPRLWDTEY 425
           P     L V EP   +TSLPR WD  Y
Sbjct: 308 PTSTKRLTVLEP---ITSLPRKWDPLY 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,923,088
Number of Sequences: 5004
Number of extensions: 39312
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)