BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1086 (516 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 84 7e-17 05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 77 8e-15 05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 60 1e-09 12_01_0899 - 8689125-8689383,8689540-8689826 30 1.3 07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099... 29 2.2 09_04_0201 + 15543318-15543488,15543956-15544069 29 2.9 09_04_0222 + 15825878-15826451,15826542-15827017 28 3.9 07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220... 28 3.9 04_01_0053 + 551027-553024 28 3.9 12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 27 6.8 05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042 27 6.8 10_01_0318 + 3493913-3496976,3497064-3497392 27 8.9 06_03_0608 + 22705321-22705652,22705809-22706178,22706264-227066... 27 8.9 03_05_0092 - 20714102-20717902 27 8.9 03_02_0306 + 7290086-7290283,7290998-7291154,7291270-7291377,729... 27 8.9 01_06_0572 - 30337572-30338107,30338209-30338422,30338505-303388... 27 8.9 01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056 27 8.9 >02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 Length = 112 Score = 83.8 bits (198), Expect = 7e-17 Identities = 41/71 (57%), Positives = 50/71 (70%) Frame = +2 Query: 239 CWQALLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGH 418 C + + YVY+AK ++ GG T R IWGKVTRPHGNSG VRAKFKSNLP +MG Sbjct: 50 CGKRMAYVYKAKTKS---GG-----TNYRCIWGKVTRPHGNSGVVRAKFKSNLPPASMGR 101 Query: 419 RIRVMLYPSRI 451 ++RV +YPS I Sbjct: 102 KVRVFMYPSSI 112 Score = 48.0 bits (109), Expect = 4e-06 Identities = 18/42 (42%), Positives = 27/42 (64%) Frame = +3 Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248 RLY + GYKR NQ+ENT+L+++EG + + +Y GK Sbjct: 11 RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGK 52 >05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 Length = 111 Score = 77.0 bits (181), Expect = 8e-15 Identities = 36/67 (53%), Positives = 47/67 (70%) Frame = +2 Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430 + YVY+AK ++ + +R IWGKVTRPHGNSG VRAKF+SNLP +MG ++RV Sbjct: 53 IAYVYKAKTKS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKVRV 104 Query: 431 MLYPSRI 451 +YPS I Sbjct: 105 FMYPSSI 111 Score = 50.0 bits (114), Expect = 1e-06 Identities = 21/50 (42%), Positives = 31/50 (62%) Frame = +3 Query: 99 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248 K + + RLY + GYKR NQ+ENT+LL++EG + + +YAGK Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGK 51 >05_07_0069 + 27475072-27475136,27475237-27475465,27475532-27475630, 27476172-27476287,27476670-27476757 Length = 198 Score = 60.1 bits (139), Expect = 1e-09 Identities = 29/54 (53%), Positives = 37/54 (68%) Frame = +2 Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAM 412 + YVY+AK ++ + +R IWGKVTRPHGNSG VRAKF+SNLP +M Sbjct: 53 IAYVYKAKTKS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98 Score = 50.0 bits (114), Expect = 1e-06 Identities = 21/50 (42%), Positives = 31/50 (62%) Frame = +3 Query: 99 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248 K + + RLY + GYKR NQ+ENT+LL++EG + + +YAGK Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGK 51 >12_01_0899 - 8689125-8689383,8689540-8689826 Length = 181 Score = 29.9 bits (64), Expect = 1.3 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -1 Query: 426 RILCPIAWAGRLDLNLART-LPELPCGRVTLPQIARSLVFLPRGPP 292 R+L P + A R + AR LPE PC R+ LP+ + LP PP Sbjct: 17 RLLLPASGAARGAV--ARLPLPEPPCARLLLPEPPWGMAALPPEPP 60 >07_03_0529 - 19107949-19108152,19108857-19109147,19109817-19109939, 19110019-19110306 Length = 301 Score = 29.1 bits (62), Expect = 2.2 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = -3 Query: 445 GRIQHHSYSVSHSLGREVRLE 383 GR+ HHS+ VS L R VRLE Sbjct: 124 GRVLHHSFPVSLFLPRNVRLE 144 >09_04_0201 + 15543318-15543488,15543956-15544069 Length = 94 Score = 28.7 bits (61), Expect = 2.9 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -1 Query: 351 GRVTLPQIARSLVFLPRGPPGIGVLFL 271 GR+ PQ + S V PRG PG+ VL L Sbjct: 6 GRLPRPQGSSSAVPRPRGLPGVSVLLL 32 >09_04_0222 + 15825878-15826451,15826542-15827017 Length = 349 Score = 28.3 bits (60), Expect = 3.9 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Frame = -1 Query: 426 RILCPIAWAGRLDLNLARTLPELPCGRVTLP-QIARSLVFLPRGPPGIGVLFLALYT*SN 250 R+L P++ A R LPE PC R+ LP Q + LP P G L Sbjct: 17 RLLLPVSGAAR-GAAARLPLPEPPCTRLPLPEQPWGTAARLPLSEPSWGTAALPPEPPWG 75 Query: 249 ACQHKRLHHYG 217 A H H+G Sbjct: 76 AAAHPPAPHWG 86 >07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282, 2204371-2204440,2204546-2204715 Length = 246 Score = 28.3 bits (60), Expect = 3.9 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -3 Query: 316 GFFATGTSGNWCPLLSSVHI 257 GFFA G+WC LL+ ++I Sbjct: 171 GFFAAAIIGSWCNLLTVIYI 190 >04_01_0053 + 551027-553024 Length = 665 Score = 28.3 bits (60), Expect = 3.9 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%) Frame = -3 Query: 358 AMWAGHLA-----PDSTQLGFFATGTSGNWCPLLS 269 A++AGHL P+ +GFFA+G+ G LLS Sbjct: 231 AIFAGHLTMSNRVPNKAYIGFFASGSDGETYGLLS 265 >12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139, 3983250-3983301,3983497-3983654,3983756-3985617, 3986029-3986093,3986176-3986340,3986836-3986893, 3987479-3987590,3987661-3987712,3988080-3988140, 3988220-3988377,3988705-3988787,3988897-3988945, 3989122-3989185,3990225-3990317,3990410-3990543, 3991364-3991585,3991815-3991937,3992103-3992267, 3993064-3993450 Length = 1479 Score = 27.5 bits (58), Expect = 6.8 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = +3 Query: 303 VAKKPSCVLSGAR*PAHMATLAVSEP--SSSLTSLPRLWDTEYE*C 434 +A +P+CVL G + T + ++ SSS+ RLWDT + C Sbjct: 1230 LADQPACVLEGHQDDVLDLTWSKTDQLLSSSMDKTVRLWDTTTKAC 1275 >05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042 Length = 1211 Score = 27.5 bits (58), Expect = 6.8 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -3 Query: 274 LSSVHIEQCLPA*KTASLRSFAPSTLRRAVFSCWLRRPRLY 152 LS + + C PA + A F P++L+R SC + P L+ Sbjct: 1019 LSHLRLNSC-PALELAHGAEFMPASLKRLAISCCVLAPDLF 1058 >10_01_0318 + 3493913-3496976,3497064-3497392 Length = 1130 Score = 27.1 bits (57), Expect = 8.9 Identities = 16/54 (29%), Positives = 29/54 (53%) Frame = -1 Query: 420 LCPIAWAGRLDLNLARTLPELPCGRVTLPQIARSLVFLPRGPPGIGVLFLALYT 259 LC + +G + LA LPEL ++ ++ + P PP G+++L+LY+ Sbjct: 184 LCVNSLSGAIPPELAAALPELTYLDLSSNNLSGPM---PEFPPRCGLVYLSLYS 234 >06_03_0608 + 22705321-22705652,22705809-22706178,22706264-22706656, 22707183-22707204,22707257-22707928,22708019-22708494 Length = 754 Score = 27.1 bits (57), Expect = 8.9 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Frame = -1 Query: 426 RILCPIAWAGRLDLNLARTLPELPCGRVTLP-QIARSLVFLPRGPPGIGVLFLALYT*SN 250 R+L P + A R LPE PC R+ LP Q + LP P G L Sbjct: 19 RLLLPASGAAR-GAAARLPLPEPPCTRLLLPEQPWGAAARLPLSEPSWGTAALPPEPPWG 77 Query: 249 ACQHKRLHHYG 217 A H H+G Sbjct: 78 AAAHPPASHWG 88 >03_05_0092 - 20714102-20717902 Length = 1266 Score = 27.1 bits (57), Expect = 8.9 Identities = 11/32 (34%), Positives = 15/32 (46%) Frame = -3 Query: 343 HLAPDSTQLGFFATGTSGNWCPLLSSVHIEQC 248 H P S+ AT G W L+++ I QC Sbjct: 974 HSLPPSSSSDAIATSKEGRWTSRLTTLQIHQC 1005 >03_02_0306 + 7290086-7290283,7290998-7291154,7291270-7291377, 7291494-7291621,7291733-7291861,7291945-7292012, 7292130-7292361 Length = 339 Score = 27.1 bits (57), Expect = 8.9 Identities = 13/47 (27%), Positives = 21/47 (44%) Frame = -3 Query: 439 IQHHSYSVSHSLGREVRLELGSDTARVAMWAGHLAPDSTQLGFFATG 299 I H + + H R+ ++ + W G L P+S +L FF G Sbjct: 248 INGHDHCLEHISSRDSPIQYFTSGGGSKAWRGVLQPNSDKLQFFYDG 294 >01_06_0572 - 30337572-30338107,30338209-30338422,30338505-30338862, 30338948-30339048,30339185-30339749,30340553-30340664, 30341196-30341372,30341589-30341686,30341859-30341953, 30342078-30342158 Length = 778 Score = 27.1 bits (57), Expect = 8.9 Identities = 15/46 (32%), Positives = 18/46 (39%) Frame = -3 Query: 379 GSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSVHIEQCLP 242 G T + AG P LG FA GT+ PL + C P Sbjct: 221 GHGTHTASTVAGRTVPGVAALGGFAPGTASGGAPLARVAVYKVCWP 266 >01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056 Length = 530 Score = 27.1 bits (57), Expect = 8.9 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = -3 Query: 232 TASLRSFAPSTLRRAVFSCWLRRPRLYPVNTAFAYSLPWRGFDAL 98 T +L S+ P + R F+ W+R V +++PW G L Sbjct: 153 TVTLTSYFPES-ERDTFAGWIRAVAAKGVRDLTLHNIPWSGLHVL 196 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,931,351 Number of Sequences: 37544 Number of extensions: 317748 Number of successful extensions: 881 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 854 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 881 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1118831240 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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