Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1086
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451 84 7e-17
05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009 77 8e-15
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756... 60 1e-09
12_01_0899 - 8689125-8689383,8689540-8689826 30 1.3
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099... 29 2.2
09_04_0201 + 15543318-15543488,15543956-15544069 29 2.9
09_04_0222 + 15825878-15826451,15826542-15827017 28 3.9
07_01_0308 + 2203597-2203774,2203886-2204066,2204141-2204282,220... 28 3.9
04_01_0053 + 551027-553024 28 3.9
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 27 6.8
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042 27 6.8
10_01_0318 + 3493913-3496976,3497064-3497392 27 8.9
06_03_0608 + 22705321-22705652,22705809-22706178,22706264-227066... 27 8.9
03_05_0092 - 20714102-20717902 27 8.9
03_02_0306 + 7290086-7290283,7290998-7291154,7291270-7291377,729... 27 8.9
01_06_0572 - 30337572-30338107,30338209-30338422,30338505-303388... 27 8.9
01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056 27 8.9
>02_05_0995 + 33377933-33378000,33378099-33378327,33378410-33378451
Length = 112
Score = 83.8 bits (198), Expect = 7e-17
Identities = 41/71 (57%), Positives = 50/71 (70%)
Frame = +2
Query: 239 CWQALLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGH 418
C + + YVY+AK ++ GG T R IWGKVTRPHGNSG VRAKFKSNLP +MG
Sbjct: 50 CGKRMAYVYKAKTKS---GG-----TNYRCIWGKVTRPHGNSGVVRAKFKSNLPPASMGR 101
Query: 419 RIRVMLYPSRI 451
++RV +YPS I
Sbjct: 102 KVRVFMYPSSI 112
Score = 48.0 bits (109), Expect = 4e-06
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +3
Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
RLY + GYKR NQ+ENT+L+++EG + + +Y GK
Sbjct: 11 RLYVRGTILGYKRSKSNQYENTSLVQIEGVNTKEEVAWYCGK 52
>05_07_0061 + 27420442-27420506,27420619-27420847,27420968-27421009
Length = 111
Score = 77.0 bits (181), Expect = 8e-15
Identities = 36/67 (53%), Positives = 47/67 (70%)
Frame = +2
Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430
+ YVY+AK ++ + +R IWGKVTRPHGNSG VRAKF+SNLP +MG ++RV
Sbjct: 53 IAYVYKAKTKS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKVRV 104
Query: 431 MLYPSRI 451
+YPS I
Sbjct: 105 FMYPSSI 111
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +3
Query: 99 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
K + + RLY + GYKR NQ+ENT+LL++EG + + +YAGK
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGK 51
>05_07_0069 +
27475072-27475136,27475237-27475465,27475532-27475630,
27476172-27476287,27476670-27476757
Length = 198
Score = 60.1 bits (139), Expect = 1e-09
Identities = 29/54 (53%), Positives = 37/54 (68%)
Frame = +2
Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAM 412
+ YVY+AK ++ + +R IWGKVTRPHGNSG VRAKF+SNLP +M
Sbjct: 53 IAYVYKAKTKS--------NDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSM 98
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +3
Query: 99 KASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
K + + RLY + GYKR NQ+ENT+LL++EG + + +YAGK
Sbjct: 2 KGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGK 51
>12_01_0899 - 8689125-8689383,8689540-8689826
Length = 181
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -1
Query: 426 RILCPIAWAGRLDLNLART-LPELPCGRVTLPQIARSLVFLPRGPP 292
R+L P + A R + AR LPE PC R+ LP+ + LP PP
Sbjct: 17 RLLLPASGAARGAV--ARLPLPEPPCARLLLPEPPWGMAALPPEPP 60
>07_03_0529 -
19107949-19108152,19108857-19109147,19109817-19109939,
19110019-19110306
Length = 301
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -3
Query: 445 GRIQHHSYSVSHSLGREVRLE 383
GR+ HHS+ VS L R VRLE
Sbjct: 124 GRVLHHSFPVSLFLPRNVRLE 144
>09_04_0201 + 15543318-15543488,15543956-15544069
Length = 94
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 351 GRVTLPQIARSLVFLPRGPPGIGVLFL 271
GR+ PQ + S V PRG PG+ VL L
Sbjct: 6 GRLPRPQGSSSAVPRPRGLPGVSVLLL 32
>09_04_0222 + 15825878-15826451,15826542-15827017
Length = 349
Score = 28.3 bits (60), Expect = 3.9
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = -1
Query: 426 RILCPIAWAGRLDLNLARTLPELPCGRVTLP-QIARSLVFLPRGPPGIGVLFLALYT*SN 250
R+L P++ A R LPE PC R+ LP Q + LP P G L
Sbjct: 17 RLLLPVSGAAR-GAAARLPLPEPPCTRLPLPEQPWGTAARLPLSEPSWGTAALPPEPPWG 75
Query: 249 ACQHKRLHHYG 217
A H H+G
Sbjct: 76 AAAHPPAPHWG 86
>07_01_0308 +
2203597-2203774,2203886-2204066,2204141-2204282,
2204371-2204440,2204546-2204715
Length = 246
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 316 GFFATGTSGNWCPLLSSVHI 257
GFFA G+WC LL+ ++I
Sbjct: 171 GFFAAAIIGSWCNLLTVIYI 190
>04_01_0053 + 551027-553024
Length = 665
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = -3
Query: 358 AMWAGHLA-----PDSTQLGFFATGTSGNWCPLLS 269
A++AGHL P+ +GFFA+G+ G LLS
Sbjct: 231 AIFAGHLTMSNRVPNKAYIGFFASGSDGETYGLLS 265
>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 303 VAKKPSCVLSGAR*PAHMATLAVSEP--SSSLTSLPRLWDTEYE*C 434
+A +P+CVL G + T + ++ SSS+ RLWDT + C
Sbjct: 1230 LADQPACVLEGHQDDVLDLTWSKTDQLLSSSMDKTVRLWDTTTKAC 1275
>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
Length = 1211
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 274 LSSVHIEQCLPA*KTASLRSFAPSTLRRAVFSCWLRRPRLY 152
LS + + C PA + A F P++L+R SC + P L+
Sbjct: 1019 LSHLRLNSC-PALELAHGAEFMPASLKRLAISCCVLAPDLF 1058
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = -1
Query: 420 LCPIAWAGRLDLNLARTLPELPCGRVTLPQIARSLVFLPRGPPGIGVLFLALYT 259
LC + +G + LA LPEL ++ ++ + P PP G+++L+LY+
Sbjct: 184 LCVNSLSGAIPPELAAALPELTYLDLSSNNLSGPM---PEFPPRCGLVYLSLYS 234
>06_03_0608 +
22705321-22705652,22705809-22706178,22706264-22706656,
22707183-22707204,22707257-22707928,22708019-22708494
Length = 754
Score = 27.1 bits (57), Expect = 8.9
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = -1
Query: 426 RILCPIAWAGRLDLNLARTLPELPCGRVTLP-QIARSLVFLPRGPPGIGVLFLALYT*SN 250
R+L P + A R LPE PC R+ LP Q + LP P G L
Sbjct: 19 RLLLPASGAAR-GAAARLPLPEPPCTRLLLPEQPWGAAARLPLSEPSWGTAALPPEPPWG 77
Query: 249 ACQHKRLHHYG 217
A H H+G
Sbjct: 78 AAAHPPASHWG 88
>03_05_0092 - 20714102-20717902
Length = 1266
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 343 HLAPDSTQLGFFATGTSGNWCPLLSSVHIEQC 248
H P S+ AT G W L+++ I QC
Sbjct: 974 HSLPPSSSSDAIATSKEGRWTSRLTTLQIHQC 1005
>03_02_0306 +
7290086-7290283,7290998-7291154,7291270-7291377,
7291494-7291621,7291733-7291861,7291945-7292012,
7292130-7292361
Length = 339
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -3
Query: 439 IQHHSYSVSHSLGREVRLELGSDTARVAMWAGHLAPDSTQLGFFATG 299
I H + + H R+ ++ + W G L P+S +L FF G
Sbjct: 248 INGHDHCLEHISSRDSPIQYFTSGGGSKAWRGVLQPNSDKLQFFYDG 294
>01_06_0572 -
30337572-30338107,30338209-30338422,30338505-30338862,
30338948-30339048,30339185-30339749,30340553-30340664,
30341196-30341372,30341589-30341686,30341859-30341953,
30342078-30342158
Length = 778
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = -3
Query: 379 GSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSVHIEQCLP 242
G T + AG P LG FA GT+ PL + C P
Sbjct: 221 GHGTHTASTVAGRTVPGVAALGGFAPGTASGGAPLARVAVYKVCWP 266
>01_05_0581 + 23404809-23405885,23406434-23406580,23406688-23407056
Length = 530
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -3
Query: 232 TASLRSFAPSTLRRAVFSCWLRRPRLYPVNTAFAYSLPWRGFDAL 98
T +L S+ P + R F+ W+R V +++PW G L
Sbjct: 153 TVTLTSYFPES-ERDTFAGWIRAVAAKGVRDLTLHNIPWSGLHVL 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,931,351
Number of Sequences: 37544
Number of extensions: 317748
Number of successful extensions: 881
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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