Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1086
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)             77   7e-15
SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_20453| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08)                   28   4.0  
SB_36665| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)                 27   9.2  
SB_252| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.2  

>SB_18396| Best HMM Match : Ribosomal_L35Ae (HMM E-Value=0)
          Length = 115

 Score = 77.4 bits (182), Expect = 7e-15
 Identities = 38/61 (62%), Positives = 44/61 (72%)
 Frame = +2

Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430
           L +VYRAK +T   G    K TKLR IWGKVTR HGNSG VRAKF+ NLP +AMG  +RV
Sbjct: 49  LAFVYRAKNKTVAKGDK--KATKLRVIWGKVTRAHGNSGVVRAKFRHNLPPKAMGATVRV 106

Query: 431 M 433
           +
Sbjct: 107 I 107



 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 24/42 (57%), Positives = 31/42 (73%)
 Frame = +3

Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
           RLY K +  G+KRGLRNQH NT+L+K+EG  +R +  FY GK
Sbjct: 6   RLYTKGIVLGFKRGLRNQHPNTSLVKIEGVDERKNTEFYLGK 47


>SB_21444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 399 GRLDLNLARTLPELPCGRVTLPQI 328
           G  DLN+ +T+P + C R+  P++
Sbjct: 257 GLFDLNIGQTIPSVTCRRIPFPEL 280


>SB_20453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 231 VFYAGKHCSMCTELRRGHQFPEVPVAKKPSC 323
           VF + K  S C + + G  F  VP+AK  SC
Sbjct: 83  VFLSRKDLSACVKSKPGSLFVAVPLAKSVSC 113


>SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08)
          Length = 614

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = -3

Query: 388 LELGSDTARVAMWAG----HLAPDSTQLGFFATGTSGNWC 281
           L L   TA + +W G    HLA D   +  FATG S  WC
Sbjct: 12  LALRQPTASLNIWEGRAPPHLAVDGVNMSTFATG-STIWC 50


>SB_36665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +1

Query: 157 SVVYATSTRTPLSSRLKEQKTVMMQSFMLASIALCVQS*EEDTNSRRSPWQKNQ 318
           SV+  TS    L+S++  Q++ +++SF+LA     V      T S  SPWQ ++
Sbjct: 601 SVISFTSILIILASQV--QRSRLIESFILAIGLTLVYHYRSATGSLTSPWQHHE 652


>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
          Length = 506

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 266 RAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGS 370
           R ++R P P  PR       + WG  T   GN+G+
Sbjct: 79  RRRRRRPPPCPPRNCAVSAWSSWGPCTHQCGNAGT 113


>SB_252| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 254 LYVYRAKKRTPIPGGPRGKKTKLRAIWGKV 343
           L + R  +  PI G PR ++  L  IWGK+
Sbjct: 47  LRIRRIIRLKPIRGKPRVRRISLARIWGKL 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,360,073
Number of Sequences: 59808
Number of extensions: 339863
Number of successful extensions: 809
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)