Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1086
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...    81   3e-16
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical...    27   6.0  
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical...    27   6.0  

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 37/67 (55%), Positives = 49/67 (73%)
 Frame = +2

Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430
           ++Y+Y+A  +T   G      T+ RAIWGK+TRPHGN+G+VRAKF  N+P  A+G RIRV
Sbjct: 60  VVYLYKAHNKTLKTG--HTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRV 117

Query: 431 MLYPSRI 451
           +LYPS I
Sbjct: 118 LLYPSNI 124



 Score = 71.7 bits (168), Expect = 3e-13
 Identities = 32/51 (62%), Positives = 40/51 (78%)
 Frame = +3

Query: 96  RKASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
           R+ S P  GRLY KA+FTG+KRGLR Q E+T+LLK+EG  ++ DA FYAGK
Sbjct: 8   RRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGK 58


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 450 ILEGYSITRILCPIAWAGRLDLNLARTLPELP 355
           +L+G S+ RI    AW   +D+ +  T P  P
Sbjct: 38  VLDGVSVFRIETDAAWTDMMDIQITVTPPSKP 69


>AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical
           protein Y110A7A.9b protein.
          Length = 908

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 391 RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNW 284
           ++ L   T   + W GHLA ++ Q+   A  +  NW
Sbjct: 839 KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNW 874


>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
            protein Y110A7A.9a protein.
          Length = 1019

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 391  RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNW 284
            ++ L   T   + W GHLA ++ Q+   A  +  NW
Sbjct: 950  KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNW 985


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,942,172
Number of Sequences: 27780
Number of extensions: 239701
Number of successful extensions: 541
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)