Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1086
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) si... 75 2e-14
At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) si... 75 2e-14
At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ri... 75 4e-14
At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) id... 75 4e-14
At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3... 29 1.4
At5g44620.1 68418.m05467 cytochrome P450 family protein similar ... 27 5.7
At5g17920.1 68418.m02101 5-methyltetrahydropteroyltriglutamate--... 27 5.7
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 27 5.7
At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family prot... 27 5.7
At5g51195.1 68418.m06348 hypothetical protein 27 7.5
At2g04350.2 68415.m00434 long-chain-fatty-acid--CoA ligase famil... 27 9.9
At2g04350.1 68415.m00433 long-chain-fatty-acid--CoA ligase famil... 27 9.9
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 27 9.9
>At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC)
similar to ribosomal protein L33B GB:NP_014877 from
[Saccharomyces cerevisiae]
Length = 112
Score = 75.4 bits (177), Expect = 2e-14
Identities = 36/67 (53%), Positives = 45/67 (67%)
Frame = +2
Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430
+ Y+Y+AK + + R IWGKVTRPHGNSG VRAKF SNLP ++MG R+RV
Sbjct: 54 MAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRV 105
Query: 431 MLYPSRI 451
+YPS I
Sbjct: 106 FMYPSNI 112
Score = 43.6 bits (98), Expect = 8e-05
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +3
Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
RLY + GYKR NQ+ NT+L+++EG + + +Y GK
Sbjct: 11 RLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGK 52
>At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA)
similar to ribosomal protein L35a GI:57118 from [Rattus
norvegicus]
Length = 112
Score = 75.4 bits (177), Expect = 2e-14
Identities = 36/67 (53%), Positives = 45/67 (67%)
Frame = +2
Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430
+ Y+Y+AK + + R IWGKVTRPHGNSG VRAKF SNLP ++MG R+RV
Sbjct: 54 MAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRV 105
Query: 431 MLYPSRI 451
+YPS I
Sbjct: 106 FMYPSNI 112
Score = 43.6 bits (98), Expect = 8e-05
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +3
Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
RLY + GYKR NQ+ NT+L++VEG + +Y GK
Sbjct: 11 RLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGK 52
>At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD)
ribosomal protein L35a.e.c15, Saccharomyces cerevisiae,
PIR:S44069
Length = 111
Score = 74.5 bits (175), Expect = 4e-14
Identities = 36/67 (53%), Positives = 45/67 (67%)
Frame = +2
Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430
L Y+Y+AK + + R IWGKVTRPHGNSG VR+KF SNLP ++MG R+RV
Sbjct: 53 LAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRV 104
Query: 431 MLYPSRI 451
+YPS I
Sbjct: 105 FMYPSNI 111
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +3
Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
RLY + GYKR NQ+ NT+L+++EG + + +Y GK
Sbjct: 10 RLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGK 51
>At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB)
identical to GB:CAB81600 from [Arabidopsis thaliana]
Length = 111
Score = 74.5 bits (175), Expect = 4e-14
Identities = 36/67 (53%), Positives = 45/67 (67%)
Frame = +2
Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430
L Y+Y+AK + + R IWGKVTRPHGNSG VR+KF SNLP ++MG R+RV
Sbjct: 53 LAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRV 104
Query: 431 MLYPSRI 451
+YPS I
Sbjct: 105 FMYPSNI 111
Score = 43.6 bits (98), Expect = 8e-05
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +3
Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
RLY + GYKR NQ+ NT+L+++EG + + +Y GK
Sbjct: 10 RLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGK 51
>At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3)
family protein contains Pfam profile: PF05879 root hair
defective 3 GTP-binding protein (RHD3) family
Length = 834
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKF 385
LL+V R K +TPI R + ++ IW V +P + + +F
Sbjct: 166 LLFVIRDKTKTPIELLERALREDIQKIWDSVRKPEAHKNTPLNEF 210
>At5g44620.1 68418.m05467 cytochrome P450 family protein similar to
cytocrhome P450 monooxygenase (GI:14334057) [Gossypium
arboreum]
Length = 519
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 230 SLLCWQALLYVYRAKKRTPIPGGPRG 307
S LCW LY ++ P+P GP G
Sbjct: 27 STLCWCLWLYAKCKRRSPPLPPGPWG 52
>At5g17920.1 68418.m02101
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase / vitamin-B12-independent methionine
synthase / cobalamin-independent methionine synthase
(CIMS) identical to SP|O50008
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
methionine synthase isozyme) (Cobalamin-independent
methionine synthase isozyme) {Arabidopsis thaliana}
Length = 765
Score = 27.5 bits (58), Expect = 5.7
Identities = 26/92 (28%), Positives = 36/92 (39%)
Frame = +3
Query: 129 YAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCSMCTELRRGHQFPEVPVA 308
Y KA+ K+ + Q E + V G +RND V Y G+ S G
Sbjct: 463 YVKAIKEEIKKVVDLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRC 522
Query: 309 KKPSCVLSGAR*PAHMATLAVSEPSSSLTSLP 404
KP + P M T+ S + S+TS P
Sbjct: 523 VKPPVIYGDVSRPKAM-TVFWSAMAQSMTSRP 553
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -3
Query: 433 HHSYSVS-HSLGREVRLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSS 266
H S +S +LGRE L +G D G + P+ST+L + A+ ++ C ++S
Sbjct: 304 HQSELLSIDALGRERVLSVGRDRTMQLYKVGIVVPESTRLIYRASESNFECCCFVNS 360
>At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family protein
similar to early nodulin ENOD8 [Medicago sativa]
GI:304037, elicitor-induced glycoprotein iEP4 [Daucus
carota] GI:1911765, lanatoside 15'-O-acetylesterase
[Digitalis lanata] GI:3688284; contains InterPro Entry
IPR001087 Lipolytic enzyme, G-D-S-L family
Length = 379
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 376 SDTARVAMWAGHLAPDSTQLGFFATGTSGNWC 281
SDT ++ G L S ++ FF + TSG +C
Sbjct: 45 SDTGELSSGLGFLPQPSYEITFFRSPTSGRFC 76
>At5g51195.1 68418.m06348 hypothetical protein
Length = 267
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 397 EVRLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWC 281
E++ E+ S+ W D T FFA+ SG WC
Sbjct: 209 EIQAEMESEDVAATFWID----DETHDDFFASSKSGWWC 243
>At2g04350.2 68415.m00434 long-chain-fatty-acid--CoA ligase family
protein / long-chain acyl-CoA synthetase family protein
(LACS8) similar to LACS 4 [SP|O35547] from Rattus
norvegicus, LACS 4 [SP|O60488] from Homo sapiens;
contains Pfam HMM hit: AMP-binding enzymes PF00501
Length = 720
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 459 GS*ILEGYSITRILCPIAWAGRLDLNLARTLPELPCGRVTL 337
GS I +GY +T ++ D + R P LPCG V L
Sbjct: 469 GSPIGQGYGLTETCAGATFSEWDDPAVGRVGPPLPCGYVKL 509
>At2g04350.1 68415.m00433 long-chain-fatty-acid--CoA ligase family
protein / long-chain acyl-CoA synthetase family protein
(LACS8) similar to LACS 4 [SP|O35547] from Rattus
norvegicus, LACS 4 [SP|O60488] from Homo sapiens;
contains Pfam HMM hit: AMP-binding enzymes PF00501
Length = 720
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 459 GS*ILEGYSITRILCPIAWAGRLDLNLARTLPELPCGRVTL 337
GS I +GY +T ++ D + R P LPCG V L
Sbjct: 469 GSPIGQGYGLTETCAGATFSEWDDPAVGRVGPPLPCGYVKL 509
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/52 (28%), Positives = 20/52 (38%)
Frame = +2
Query: 275 KRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430
K P P P K +G GN+ ++ K KSN M + RV
Sbjct: 132 KPAPSPPKPENKTIPAVFFFGDSVFDTGNNNNLETKIKSNYRPYGMDFKFRV 183
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,612,162
Number of Sequences: 28952
Number of extensions: 229453
Number of successful extensions: 654
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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