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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1086
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) si...    75   2e-14
At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) si...    75   2e-14
At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ri...    75   4e-14
At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) id...    75   4e-14
At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3...    29   1.4  
At5g44620.1 68418.m05467 cytochrome P450 family protein similar ...    27   5.7  
At5g17920.1 68418.m02101 5-methyltetrahydropteroyltriglutamate--...    27   5.7  
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea...    27   5.7  
At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family prot...    27   5.7  
At5g51195.1 68418.m06348 hypothetical protein                          27   7.5  
At2g04350.2 68415.m00434 long-chain-fatty-acid--CoA ligase famil...    27   9.9  
At2g04350.1 68415.m00433 long-chain-fatty-acid--CoA ligase famil...    27   9.9  
At1g20130.1 68414.m02518 family II extracellular lipase, putativ...    27   9.9  

>At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC)
           similar to ribosomal protein L33B GB:NP_014877 from
           [Saccharomyces cerevisiae]
          Length = 112

 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 36/67 (53%), Positives = 45/67 (67%)
 Frame = +2

Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430
           + Y+Y+AK +           +  R IWGKVTRPHGNSG VRAKF SNLP ++MG R+RV
Sbjct: 54  MAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRV 105

Query: 431 MLYPSRI 451
            +YPS I
Sbjct: 106 FMYPSNI 112



 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +3

Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
           RLY +    GYKR   NQ+ NT+L+++EG   + +  +Y GK
Sbjct: 11  RLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGK 52


>At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA)
           similar to ribosomal protein L35a GI:57118 from [Rattus
           norvegicus]
          Length = 112

 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 36/67 (53%), Positives = 45/67 (67%)
 Frame = +2

Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430
           + Y+Y+AK +           +  R IWGKVTRPHGNSG VRAKF SNLP ++MG R+RV
Sbjct: 54  MAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRV 105

Query: 431 MLYPSRI 451
            +YPS I
Sbjct: 106 FMYPSNI 112



 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = +3

Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
           RLY +    GYKR   NQ+ NT+L++VEG     +  +Y GK
Sbjct: 11  RLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGK 52


>At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD)
           ribosomal protein L35a.e.c15, Saccharomyces cerevisiae,
           PIR:S44069
          Length = 111

 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 36/67 (53%), Positives = 45/67 (67%)
 Frame = +2

Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430
           L Y+Y+AK +           +  R IWGKVTRPHGNSG VR+KF SNLP ++MG R+RV
Sbjct: 53  LAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRV 104

Query: 431 MLYPSRI 451
            +YPS I
Sbjct: 105 FMYPSNI 111



 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +3

Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
           RLY +    GYKR   NQ+ NT+L+++EG   + +  +Y GK
Sbjct: 10  RLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGK 51


>At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB)
           identical to GB:CAB81600 from [Arabidopsis thaliana]
          Length = 111

 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 36/67 (53%), Positives = 45/67 (67%)
 Frame = +2

Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430
           L Y+Y+AK +           +  R IWGKVTRPHGNSG VR+KF SNLP ++MG R+RV
Sbjct: 53  LAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRV 104

Query: 431 MLYPSRI 451
            +YPS I
Sbjct: 105 FMYPSNI 111



 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +3

Query: 123 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGK 248
           RLY +    GYKR   NQ+ NT+L+++EG   + +  +Y GK
Sbjct: 10  RLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGK 51


>At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3)
           family protein contains Pfam profile: PF05879 root hair
           defective 3 GTP-binding protein    (RHD3) family
          Length = 834

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 251 LLYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKF 385
           LL+V R K +TPI    R  +  ++ IW  V +P  +  +   +F
Sbjct: 166 LLFVIRDKTKTPIELLERALREDIQKIWDSVRKPEAHKNTPLNEF 210


>At5g44620.1 68418.m05467 cytochrome P450 family protein similar to
           cytocrhome P450 monooxygenase (GI:14334057) [Gossypium
           arboreum]
          Length = 519

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 230 SLLCWQALLYVYRAKKRTPIPGGPRG 307
           S LCW   LY    ++  P+P GP G
Sbjct: 27  STLCWCLWLYAKCKRRSPPLPPGPWG 52


>At5g17920.1 68418.m02101
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase / vitamin-B12-independent methionine
           synthase / cobalamin-independent methionine synthase
           (CIMS) identical to SP|O50008
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
           methionine synthase isozyme) (Cobalamin-independent
           methionine synthase isozyme) {Arabidopsis thaliana}
          Length = 765

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 26/92 (28%), Positives = 36/92 (39%)
 Frame = +3

Query: 129 YAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAGKHCSMCTELRRGHQFPEVPVA 308
           Y KA+    K+ +  Q E    + V G  +RND V Y G+  S       G         
Sbjct: 463 YVKAIKEEIKKVVDLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTANGWVQSYGSRC 522

Query: 309 KKPSCVLSGAR*PAHMATLAVSEPSSSLTSLP 404
            KP  +      P  M T+  S  + S+TS P
Sbjct: 523 VKPPVIYGDVSRPKAM-TVFWSAMAQSMTSRP 553


>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400); some
           similarity to a group of proteins with homology to
           mammalian apoptosis regulators identified in zebrafish
           (PUBMED:10917738)Apaf-1(gi:7677507)
          Length = 537

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 433 HHSYSVS-HSLGREVRLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSS 266
           H S  +S  +LGRE  L +G D        G + P+ST+L + A+ ++   C  ++S
Sbjct: 304 HQSELLSIDALGRERVLSVGRDRTMQLYKVGIVVPESTRLIYRASESNFECCCFVNS 360


>At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family protein
           similar to early nodulin ENOD8 [Medicago sativa]
           GI:304037, elicitor-induced glycoprotein iEP4 [Daucus
           carota] GI:1911765, lanatoside 15'-O-acetylesterase
           [Digitalis lanata] GI:3688284; contains InterPro Entry
           IPR001087 Lipolytic enzyme, G-D-S-L family
          Length = 379

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 376 SDTARVAMWAGHLAPDSTQLGFFATGTSGNWC 281
           SDT  ++   G L   S ++ FF + TSG +C
Sbjct: 45  SDTGELSSGLGFLPQPSYEITFFRSPTSGRFC 76


>At5g51195.1 68418.m06348 hypothetical protein
          Length = 267

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 397 EVRLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWC 281
           E++ E+ S+      W      D T   FFA+  SG WC
Sbjct: 209 EIQAEMESEDVAATFWID----DETHDDFFASSKSGWWC 243


>At2g04350.2 68415.m00434 long-chain-fatty-acid--CoA ligase family
           protein / long-chain acyl-CoA synthetase family protein
           (LACS8) similar to LACS 4 [SP|O35547] from Rattus
           norvegicus, LACS 4 [SP|O60488] from Homo sapiens;
           contains Pfam HMM hit: AMP-binding enzymes PF00501
          Length = 720

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 459 GS*ILEGYSITRILCPIAWAGRLDLNLARTLPELPCGRVTL 337
           GS I +GY +T       ++   D  + R  P LPCG V L
Sbjct: 469 GSPIGQGYGLTETCAGATFSEWDDPAVGRVGPPLPCGYVKL 509


>At2g04350.1 68415.m00433 long-chain-fatty-acid--CoA ligase family
           protein / long-chain acyl-CoA synthetase family protein
           (LACS8) similar to LACS 4 [SP|O35547] from Rattus
           norvegicus, LACS 4 [SP|O60488] from Homo sapiens;
           contains Pfam HMM hit: AMP-binding enzymes PF00501
          Length = 720

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 459 GS*ILEGYSITRILCPIAWAGRLDLNLARTLPELPCGRVTL 337
           GS I +GY +T       ++   D  + R  P LPCG V L
Sbjct: 469 GSPIGQGYGLTETCAGATFSEWDDPAVGRVGPPLPCGYVKL 509


>At1g20130.1 68414.m02518 family II extracellular lipase, putative
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
          Length = 1006

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = +2

Query: 275 KRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRIRV 430
           K  P P  P  K       +G      GN+ ++  K KSN     M  + RV
Sbjct: 132 KPAPSPPKPENKTIPAVFFFGDSVFDTGNNNNLETKIKSNYRPYGMDFKFRV 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,612,162
Number of Sequences: 28952
Number of extensions: 229453
Number of successful extensions: 654
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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