Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1084
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.72 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.72 
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    25   0.72 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.9  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.9  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   6.7  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   6.7  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   6.7  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   6.7  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   6.7  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   6.7  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   6.7  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   6.7  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   8.9  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    21   8.9  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 423 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 319
           LP V + + LL T FN   FM+  +V L +  L++
Sbjct: 264 LPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNY 298


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 423 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 319
           LP V + + LL T FN   FM+  +V L +  L++
Sbjct: 264 LPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNY 298


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 423 LPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 319
           LP V + + LL T FN   FM+  +V L +  L++
Sbjct: 264 LPQVSDAIPLLGTYFNCIMFMVASSVVLTVVVLNY 298


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 426 RLPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 319
           ++P   + + L+ T FN   FM+  +V L +  L++
Sbjct: 263 KIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNY 298


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -2

Query: 426 RLPVVGERLILLATCFNASTFMLLFNVGLMMNSLSF 319
           ++P   + + L+ T FN   FM+  +V L +  L++
Sbjct: 263 KIPTTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNY 298


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 551 SSGLAVTTSQVTSPRGQPS 495
           SSGL    S  TSP G+P+
Sbjct: 140 SSGLTSPLSVSTSPPGKPA 158


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 551 SSGLAVTTSQVTSPRGQPS 495
           SSGL    S  TSP G+P+
Sbjct: 140 SSGLTSPLSVSTSPPGKPA 158


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 551 SSGLAVTTSQVTSPRGQPS 495
           SSGL    S  TSP G+P+
Sbjct: 140 SSGLTSPLSVSTSPPGKPA 158


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 551 SSGLAVTTSQVTSPRGQPS 495
           SSGL    S  TSP G+P+
Sbjct: 140 SSGLTSPLSVSTSPPGKPA 158


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 551 SSGLAVTTSQVTSPRGQPS 495
           SSGL    S  TSP G+P+
Sbjct: 140 SSGLTSPLSVSTSPPGKPA 158


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 551 SSGLAVTTSQVTSPRGQPS 495
           SSGL    S  TSP G+P+
Sbjct: 96  SSGLTSPLSVSTSPPGKPA 114


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 551 SSGLAVTTSQVTSPRGQPS 495
           SSGL    S  TSP G+P+
Sbjct: 140 SSGLTSPLSVSTSPPGKPA 158


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 551 SSGLAVTTSQVTSPRGQPS 495
           SSGL    S  TSP G+P+
Sbjct: 140 SSGLTSPLSVSTSPPGKPA 158


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 17/76 (22%), Positives = 31/76 (40%)
 Frame = +2

Query: 233 SFFSSIKAKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSP 412
           SF   I   A  IV +     ++  KT   +K    +PT +   +     ++   +   P
Sbjct: 452 SFQGVIGEGAFGIVRRAFLDLKEDNKTQVAVKMLKESPTSEEIRQFTQEINIMKSVRQHP 511

Query: 413 TTGNLLGLLAENGRLD 460
              +L+G + E GR +
Sbjct: 512 YIVSLIGCVTE-GRAE 526


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 551 SSGLAVTTSQVTSPRGQP 498
           SSGL    S  TSP G+P
Sbjct: 140 SSGLTSPLSVSTSPPGKP 157


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,451
Number of Sequences: 336
Number of extensions: 3314
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)