Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1084
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p... 45 8e-06
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 28 1.4
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 27 1.8
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.1
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 5.5
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 7.2
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 7.2
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 7.2
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 25 9.5
SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr 1|||Ma... 25 9.5
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 25 9.5
>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 216
Score = 45.2 bits (102), Expect = 8e-06
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Frame = +3
Query: 96 NIFLNKI-MSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASK 254
+IF I ++A +L +RSL+T+ ASA PPVQ++GL+G YAS+L++AA K
Sbjct: 3 HIFRRSIPITARLPSLGIRSLATATASAH---PPVQLYGLDGSYASSLYTAAVK 53
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 564 ANLEAALKKFLKGNETLQLTAKVDPSLIGG 653
+ LE+ + K G L ++ KV PS+IGG
Sbjct: 158 SRLESRIAKSKYGKGKLLVSNKVTPSIIGG 187
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 27.9 bits (59), Expect = 1.4
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 10/94 (10%)
Frame = +2
Query: 212 GRSVCF---RSFFSSIKAKAL---DIVEKELGQFQQSIKTDA-KLKEFII--NPTLKRSM 364
G +CF R + +I+A A+ D + K++ ++ SI ++ L E I+ +P + +S
Sbjct: 120 GNKMCFFSLRQKYDTIQALAVVNKDTISKQMVKWCGSISLESIVLVEGIVKKSPEIIKSA 179
Query: 365 KV-DALKHVANKISLSPTTGNLLGLLAENGRLDK 463
V DA H+++ +SP NL L+ + GR ++
Sbjct: 180 TVQDAEIHISSIYVISPIKKNLPFLVEDAGRSEE 213
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 513 TPWAAIIILKALMTASSLSKRPFSASNPSRLPVVGERLILLATCFNAS 370
TP +I+ ++ AS R + N + L VVGE TC+NA+
Sbjct: 853 TPSKLVILETGMVKASYQMDRESLSENITCLCVVGELPFFSKTCYNAT 900
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 450 PFSASNPSRLPVVGERLILLATCFNASTFML 358
PFS S+LPV G ILL F +T+++
Sbjct: 3 PFSFDPSSKLPVTGIYNILLFNLFPLATYLV 33
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 384 CFNASTFMLLFNVGLMMNSLSF-ASVLID 301
C F+LL GL+MN L+F ASV+++
Sbjct: 1296 CITRVYFLLLKACGLIMNGLNFEASVMLE 1324
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/92 (18%), Positives = 37/92 (40%)
Frame = -1
Query: 319 CISFDRLLKLAELFFDDVKCLGFDAAEKRAEAYRPSNPNTCTGGFTICAEATLVLKERTS 140
C S ++K+ E D++ +D E E + +C ++++
Sbjct: 684 CDSLQNVIKMLESSIDEISSASYDKDELDKETPSFEAVMIFSQISFLCGFLNCFIQKKGI 743
Query: 139 RFPFKADIILFKNIFAHVNNIF*TFGFYRPVI 44
++++FKN+F V + + Y P+I
Sbjct: 744 HNVTPNNLVIFKNLFPEVLSFVKSNHSYDPII 775
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 546 WFGCNNFTSYFTPWAAIIILKALMTASSLSKRPFSASNPSRLPVV 412
WF CN+F + W + + S+LS +S+P +P++
Sbjct: 347 WFSCNHFYPEWKVWESYVTDN---LQSALSLDALRSSHPIEVPIM 388
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 383 HVANKISLSPTTGNLLGLLAENGRLDKLEAV 475
++ + +S+ P TGN + NG+ + LEA+
Sbjct: 214 NLTDAVSIEPGTGNKFTINFNNGKSETLEAL 244
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.0 bits (52), Expect = 9.5
Identities = 21/94 (22%), Positives = 41/94 (43%)
Frame = -1
Query: 394 IGDMFQRIYLHASF*CRVDDEFLELCISFDRLLKLAELFFDDVKCLGFDAAEKRAEAYRP 215
+ ++ +R+ S +D+ FL+ C++ + LL+ + + A+KR E
Sbjct: 582 MSNLLRRVLKIMSSNDNIDELFLKKCLNINLLLQHLSSEYSQISGQDASNAQKRIEVI-- 639
Query: 214 SNPNTCTGGFTICAEATLVLKERTSRFPFKADII 113
N N G TI +E+ S+F + +I
Sbjct: 640 VNVNNVYG--TIFGNELAYRQEKISKFTDPSSVI 671
>SPAC17G6.07c |||SNARE Slt1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/85 (22%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = +2
Query: 269 IVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAEN 448
I E+EL + QQ +A + + N ++ ++L H+A+ + + + L+ +N
Sbjct: 101 IQERELRERQQMSNVEASNAQLLTNQRSMQTEISESLLHLASVLKENALSFT-NALVTDN 159
Query: 449 GRLDKLEAVI--NAFKIMMAAHGVK 517
+++ +++ NA + A HGV+
Sbjct: 160 QVVERTGSLLDKNAHSLRHANHGVQ 184
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.0 bits (52), Expect = 9.5
Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 1/131 (0%)
Frame = +2
Query: 158 HKCRLSTNGKTSSASIWIGRSVCFRSFFSSIKAKALD-IVEKELGQFQQSIKTDAKLKEF 334
H + + + A + + R+ + S F + L + E Q Q + + L E+
Sbjct: 176 HSSKSTDHAYLQDAMLMLHRTEMYSSVFVPMYLVMLSRFYDTESSQKIQELPLEEYL-EY 234
Query: 335 IINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLDKLEAVINAFKIMMAAHGV 514
++ + V+ V +K S+ T L LD L I+ F AH
Sbjct: 235 AMSSLEREDAYVEKFDIVRDKKSIRETVQRCL----ITSHLDTLTKGISQFIEKRDAHSC 290
Query: 515 K*LVKLLQPNH 547
K L LLQ NH
Sbjct: 291 KLLYALLQFNH 301
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,415
Number of Sequences: 5004
Number of extensions: 54564
Number of successful extensions: 141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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