Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1084
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257... 52 4e-07
02_05_0759 + 31545473-31546204 36 0.021
03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499 30 1.9
06_02_0172 + 12594542-12596083 29 4.3
01_05_0227 - 19512866-19514983 28 5.6
12_02_0861 - 23763927-23764034,23764140-23764196,23764624-237647... 27 9.9
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085... 27 9.9
01_07_0336 - 42833205-42834926 27 9.9
>06_03_0928 +
26024589-26024645,26024900-26024956,26025464-26025707,
26026126-26026238,26026675-26026761,26026843-26026962
Length = 225
Score = 52.0 bits (119), Expect = 4e-07
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Frame = +2
Query: 236 FFSSIKAKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPT 415
F ++ KA LD VE E+ ++ K +FI + ++ + +V A+ + + S
Sbjct: 55 FLTAAKANLLDKVETEIRDVVEASKKSPLFSQFIKDLSVPKETRVKAITEIFAEAGFSDV 114
Query: 416 TGNLLGLLAENGRLDKLEAVINAFKIMMAAH--GVK*LVKLLQP 541
T N L +LA+NGRL ++ + F + AH VK LV+ + P
Sbjct: 115 TKNFLAVLADNGRLKHIDRIAERFVDLTMAHKGEVKVLVRTVIP 158
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 147 RSLSTSVA--SAQMVKPPVQVFGLEGRYASALFSAASK 254
R ++ VA + + +K P ++G G YASALF A+K
Sbjct: 23 RGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAK 60
>02_05_0759 + 31545473-31546204
Length = 243
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +2
Query: 299 QSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLDKLEAVI 478
+ I + + EF NPT+ R K + +A L N L ++ +NGR + ++
Sbjct: 89 EKIFAEEAIAEFFDNPTVPRDEKAQLIDEIAKSSELQAHVVNFLNVVVDNGRAGLMTQIV 148
Query: 479 NAFK 490
F+
Sbjct: 149 REFE 152
>03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499
Length = 454
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -2
Query: 504 AAIIILKALMTASSLSKRPFSASNPSRLPVVG 409
AA+ +L+ A+++ +RP + P RLPV+G
Sbjct: 15 AAVALLQLAKVAATMRRRPRTPPGPWRLPVIG 46
>06_02_0172 + 12594542-12596083
Length = 513
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -2
Query: 546 WFGCNNFTSYFTPWAAIIILKALMTASSLSKRPFSASNPSRLPVVG 409
W+ TS P +++++ +T S S P RLPV+G
Sbjct: 3 WYSLVLMTSLLFPLLVLLVMRCYVTRSGAKLLDKLPSVPGRLPVIG 48
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 629 FSCKLQSFIALQEFLKRCFQIC 564
F+C L S+I L LKRCF C
Sbjct: 243 FACLLLSYIHLPHHLKRCFLHC 264
>12_02_0861 -
23763927-23764034,23764140-23764196,23764624-23764740,
23764825-23764924,23765049-23765239,23765328-23765421,
23765918-23766023,23766223-23766337,23766487-23766554,
23766724-23767047,23767444-23767647,23767910-23768059,
23768151-23768256,23768383-23768490
Length = 615
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 531 CYSQTTRSSTEANLEAALKKFLKGNETLQLTAKVD 635
C SQ+ R+STEA+ AA K + E++ L ++
Sbjct: 282 CLSQSFRNSTEADKNAAYKVLIALRESVMLRTNLN 316
>04_04_1263 - 32207636-32207938,32208020-32208170,32208263-32208500,
32208604-32208814,32208927-32209108,32209196-32209297,
32210002-32211187,32212103-32212499,32212551-32212582,
32212885-32213157,32213307-32213394,32213486-32213723,
32213824-32214034,32214119-32214300,32214378-32214479,
32214801-32216224,32216751-32216822,32217688-32217719,
32218186-32218263,32218425-32218512,32218608-32218845,
32219060-32219162,32219386-32219558,32219644-32219745,
32219825-32220606,32220659-32221012,32224055-32224140,
32224250-32224400,32224534-32224771,32224876-32225119,
32225190-32225368,32225577-32225675,32225835-32227083
Length = 3195
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 316 CKAQGIHHQPDIKKKH 363
CK++GIH +I+KKH
Sbjct: 1928 CKSRGIHRSKEIQKKH 1943
>01_07_0336 - 42833205-42834926
Length = 573
Score = 27.5 bits (58), Expect = 9.9
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Frame = +2
Query: 272 VEKELGQF----QQSIKTDAKLKEFIINPTLKRSMKVDA----LKHVANKISLSPTTGNL 427
VEK L F +++++ DA L + ++ L K+DA + +K +LSP G
Sbjct: 400 VEKALQYFTEMVEKNLEADAALLDVMVKG-LCSDDKIDASYAFFVEMVDKANLSPWQGTY 458
Query: 428 LGLLAENGRLDKLEAVINAFKIMMA 502
++ E R+ KLE + + M A
Sbjct: 459 KHIIGELLRVKKLEEALGLLRSMKA 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,279,706
Number of Sequences: 37544
Number of extensions: 348864
Number of successful extensions: 897
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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