Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1084
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15670| Best HMM Match : OSCP (HMM E-Value=3.6e-06)                  69   4e-12
SB_254| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-05)                   33   0.20 
SB_27402| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_51651| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   4.4  
SB_33433| Best HMM Match : Fasciclin (HMM E-Value=1.1e-09)             29   4.4  
SB_153| Best HMM Match : Pox_TAA1 (HMM E-Value=5)                      28   7.6  
SB_6680| Best HMM Match : Astacin (HMM E-Value=0)                      28   7.6  

>SB_15670| Best HMM Match : OSCP (HMM E-Value=3.6e-06)
          Length = 154

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
 Frame = +2

Query: 236 FFSSIKAKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPT 415
           + ++ K+K L+ VE EL   +  +K   +L +FI+NPT+ ++ K   L  +      S  
Sbjct: 52  YSAAAKSKQLETVESELKNLESMMKKSERLSDFIVNPTMNKTKKQSGLTQLLKDQKFSDL 111

Query: 416 TGNLLGLLAENGRLDKLEAVINAF-KIMMAAHG 511
           T NLL  +AEN RL  + +V NAF KIM AA G
Sbjct: 112 TINLLSAMAENNRLGYINSVANAFSKIMSAARG 144



 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 27/53 (50%), Positives = 39/53 (73%)
 Frame = +3

Query: 102 FLNKIMSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKPR 260
           FL K  S L  N    SLS++ ++A+ VKPP+Q+FG+EGRYA A++SAA+K +
Sbjct: 9   FLQK--SPLLNNARQLSLSSTRSAAEFVKPPIQIFGIEGRYAHAVYSAAAKSK 59


>SB_254| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-05)
          Length = 276

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -2

Query: 438 SNPSRLPVVGERLILLATCFNASTFMLLFNVGLMMNSLSFASVLIDC*NWPSSFS 274
           SN  RL    ER I +A C   + F+L F   +++++++     ++C   PS FS
Sbjct: 147 SNACRLAYQRERNITIAVCIILAVFLLTFFPAVLLSTVTVICTAVECSLNPSVFS 201


>SB_27402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +2

Query: 269 IVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLAE 445
           I+EKE  + +   +  +   EF     ++R ++V + KH A K       G++  ++ E
Sbjct: 89  IIEKETVELEDKKENKSTTSEFTSELKIQRRVRVGSCKHPAKKADFETVFGDVANIIPE 147


>SB_51651| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 431

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = -2

Query: 513 TPWAAIIILKALMTASSLSKRPFSA-SNPSRL-PVVGERLILLATCFNASTFMLLFNVGL 340
           TP  +  +L     ++  S  P S  S P+R+ P + E L + A  F  S ++L+F +  
Sbjct: 23  TPVPSSTVLSPWPNSTYNSTSPLSTNSTPARVQPCLTEWLGIWALVFLTSGYILIFAIAT 82

Query: 339 MMNSLSFASVL 307
           ++NS+    VL
Sbjct: 83  LVNSIIIYVVL 93


>SB_33433| Best HMM Match : Fasciclin (HMM E-Value=1.1e-09)
          Length = 454

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +2

Query: 383 HVANKISLSPTTGNLLGLLAENGRLDKLEAVINA 484
           HV +++ + P++GNL+  L EN +L  L  V+N+
Sbjct: 113 HVIDRV-IFPSSGNLMSYLNENPQLSMLYEVLNS 145


>SB_153| Best HMM Match : Pox_TAA1 (HMM E-Value=5)
          Length = 139

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 302 SIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLLGLLA-ENGRLDKLEAV 475
           +I+TD K   ++++  +      D + HVA   +  P  G++   LA E    + LE V
Sbjct: 14  NIQTDGKTSSYVLSNHINCMYSTDDINHVAYDNNQRPLRGDIRSFLAFEEEAKNALEGV 72


>SB_6680| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 637

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 251 KAKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLS 409
           + K L   E E   F +  + D+K + F  NP     MK+  +KH   + SLS
Sbjct: 21  QGKPLQSSEDE-NAFDKITQVDSKYEGFTSNPDYDGDMKLPPVKHSRTRRSLS 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,878,139
Number of Sequences: 59808
Number of extensions: 402386
Number of successful extensions: 879
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)