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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1084
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80441-5|AAB37654.1|  207|Caenorhabditis elegans Atp synthase su...    83   2e-16
U80441-4|AAR25649.1|  228|Caenorhabditis elegans Atp synthase su...    83   2e-16
Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81107-11|CAJ90502.1|  476|Caenorhabditis elegans Hypothetical p...    27   8.8  
Z81107-10|CAB03233.1|  646|Caenorhabditis elegans Hypothetical p...    27   8.8  
Z73103-12|CAJ90500.1|  476|Caenorhabditis elegans Hypothetical p...    27   8.8  
Z73103-11|CAA97431.1|  646|Caenorhabditis elegans Hypothetical p...    27   8.8  

>U80441-5|AAB37654.1|  207|Caenorhabditis elegans Atp synthase
           subunit protein 3,isoform a protein.
          Length = 207

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 37/86 (43%), Positives = 59/86 (68%)
 Frame = +2

Query: 251 KAKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLL 430
           K   LD +  +L   +   K + K +EF+++PTLK + K  A++ ++ K+ L+  TGN L
Sbjct: 44  KQNKLDQISTDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFL 103

Query: 431 GLLAENGRLDKLEAVINAFKIMMAAH 508
           GLLAENGRL+KLE+V+++F+ +M AH
Sbjct: 104 GLLAENGRLNKLESVVSSFESIMRAH 129



 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 24/41 (58%), Positives = 31/41 (75%), Gaps = 2/41 (4%)
 Frame = +3

Query: 138 LLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASK 254
           L+ R  STS  +A AQ+VK P+QV G+EGRYA+AL+SA  K
Sbjct: 4   LMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHK 44



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 552 SSTEANLEAALKKFLKGNETLQLTAKVDPSLIGG 653
           SS +  L  AL K  K  + L +T  V PS++GG
Sbjct: 145 SSNQKALSDALSKIGKSGQKLTVTYAVKPSILGG 178


>U80441-4|AAR25649.1|  228|Caenorhabditis elegans Atp synthase
           subunit protein 3,isoform b protein.
          Length = 228

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 37/86 (43%), Positives = 59/86 (68%)
 Frame = +2

Query: 251 KAKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLL 430
           K   LD +  +L   +   K + K +EF+++PTLK + K  A++ ++ K+ L+  TGN L
Sbjct: 65  KQNKLDQISTDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFL 124

Query: 431 GLLAENGRLDKLEAVINAFKIMMAAH 508
           GLLAENGRL+KLE+V+++F+ +M AH
Sbjct: 125 GLLAENGRLNKLESVVSSFESIMRAH 150



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
 Frame = +3

Query: 99  IFLNKIMSALKGNLLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASK 254
           ++L  +   +   L+ R  STS  +A AQ+VK P+QV G+EGRYA+AL+SA  K
Sbjct: 12  LYLTILHEKVMAQLMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHK 65



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 552 SSTEANLEAALKKFLKGNETLQLTAKVDPSLIGG 653
           SS +  L  AL K  K  + L +T  V PS++GG
Sbjct: 166 SSNQKALSDALSKIGKSGQKLTVTYAVKPSILGG 199


>Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical
           protein F09B12.2 protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 432 PSRLPVVGERLILLATCFNASTFMLLFN 349
           P+  PV+GE  ++ ATCF    F L  N
Sbjct: 51  PTWYPVMGEAWVIRATCFGVLVFNLYSN 78


>Z81107-11|CAJ90502.1|  476|Caenorhabditis elegans Hypothetical
           protein R07H5.2b protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 191 SSASIWIGRSVCFRSFFSSIKAKALDIVEKELGQFQQSIKTDAKLKEF 334
           S+A+   GR+ C RS  S+ +A  L I+E+     +Q + TD   + F
Sbjct: 314 STAAFLKGRTECMRSATSATRAATLAILEENRKDVRQ-LLTDCSTQHF 360


>Z81107-10|CAB03233.1|  646|Caenorhabditis elegans Hypothetical
           protein R07H5.2a protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 191 SSASIWIGRSVCFRSFFSSIKAKALDIVEKELGQFQQSIKTDAKLKEF 334
           S+A+   GR+ C RS  S+ +A  L I+E+     +Q + TD   + F
Sbjct: 484 STAAFLKGRTECMRSATSATRAATLAILEENRKDVRQ-LLTDCSTQHF 530


>Z73103-12|CAJ90500.1|  476|Caenorhabditis elegans Hypothetical
           protein R07H5.2b protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 191 SSASIWIGRSVCFRSFFSSIKAKALDIVEKELGQFQQSIKTDAKLKEF 334
           S+A+   GR+ C RS  S+ +A  L I+E+     +Q + TD   + F
Sbjct: 314 STAAFLKGRTECMRSATSATRAATLAILEENRKDVRQ-LLTDCSTQHF 360


>Z73103-11|CAA97431.1|  646|Caenorhabditis elegans Hypothetical
           protein R07H5.2a protein.
          Length = 646

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 191 SSASIWIGRSVCFRSFFSSIKAKALDIVEKELGQFQQSIKTDAKLKEF 334
           S+A+   GR+ C RS  S+ +A  L I+E+     +Q + TD   + F
Sbjct: 484 STAAFLKGRTECMRSATSATRAATLAILEENRKDVRQ-LLTDCSTQHF 530


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,896,879
Number of Sequences: 27780
Number of extensions: 308523
Number of successful extensions: 818
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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