BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1084 (655 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase su... 83 2e-16 U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase su... 83 2e-16 Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical pr... 28 5.0 Z81107-11|CAJ90502.1| 476|Caenorhabditis elegans Hypothetical p... 27 8.8 Z81107-10|CAB03233.1| 646|Caenorhabditis elegans Hypothetical p... 27 8.8 Z73103-12|CAJ90500.1| 476|Caenorhabditis elegans Hypothetical p... 27 8.8 Z73103-11|CAA97431.1| 646|Caenorhabditis elegans Hypothetical p... 27 8.8 >U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase subunit protein 3,isoform a protein. Length = 207 Score = 82.6 bits (195), Expect = 2e-16 Identities = 37/86 (43%), Positives = 59/86 (68%) Frame = +2 Query: 251 KAKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLL 430 K LD + +L + K + K +EF+++PTLK + K A++ ++ K+ L+ TGN L Sbjct: 44 KQNKLDQISTDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFL 103 Query: 431 GLLAENGRLDKLEAVINAFKIMMAAH 508 GLLAENGRL+KLE+V+++F+ +M AH Sbjct: 104 GLLAENGRLNKLESVVSSFESIMRAH 129 Score = 48.0 bits (109), Expect = 6e-06 Identities = 24/41 (58%), Positives = 31/41 (75%), Gaps = 2/41 (4%) Frame = +3 Query: 138 LLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASK 254 L+ R STS +A AQ+VK P+QV G+EGRYA+AL+SA K Sbjct: 4 LMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHK 44 Score = 28.3 bits (60), Expect = 5.0 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +3 Query: 552 SSTEANLEAALKKFLKGNETLQLTAKVDPSLIGG 653 SS + L AL K K + L +T V PS++GG Sbjct: 145 SSNQKALSDALSKIGKSGQKLTVTYAVKPSILGG 178 >U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase subunit protein 3,isoform b protein. Length = 228 Score = 82.6 bits (195), Expect = 2e-16 Identities = 37/86 (43%), Positives = 59/86 (68%) Frame = +2 Query: 251 KAKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLL 430 K LD + +L + K + K +EF+++PTLK + K A++ ++ K+ L+ TGN L Sbjct: 65 KQNKLDQISTDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFL 124 Query: 431 GLLAENGRLDKLEAVINAFKIMMAAH 508 GLLAENGRL+KLE+V+++F+ +M AH Sbjct: 125 GLLAENGRLNKLESVVSSFESIMRAH 150 Score = 50.0 bits (114), Expect = 1e-06 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 2/54 (3%) Frame = +3 Query: 99 IFLNKIMSALKGNLLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASK 254 ++L + + L+ R STS +A AQ+VK P+QV G+EGRYA+AL+SA K Sbjct: 12 LYLTILHEKVMAQLMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHK 65 Score = 28.3 bits (60), Expect = 5.0 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +3 Query: 552 SSTEANLEAALKKFLKGNETLQLTAKVDPSLIGG 653 SS + L AL K K + L +T V PS++GG Sbjct: 166 SSNQKALSDALSKIGKSGQKLTVTYAVKPSILGG 199 >Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical protein F09B12.2 protein. Length = 295 Score = 28.3 bits (60), Expect = 5.0 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -2 Query: 432 PSRLPVVGERLILLATCFNASTFMLLFN 349 P+ PV+GE ++ ATCF F L N Sbjct: 51 PTWYPVMGEAWVIRATCFGVLVFNLYSN 78 >Z81107-11|CAJ90502.1| 476|Caenorhabditis elegans Hypothetical protein R07H5.2b protein. Length = 476 Score = 27.5 bits (58), Expect = 8.8 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +2 Query: 191 SSASIWIGRSVCFRSFFSSIKAKALDIVEKELGQFQQSIKTDAKLKEF 334 S+A+ GR+ C RS S+ +A L I+E+ +Q + TD + F Sbjct: 314 STAAFLKGRTECMRSATSATRAATLAILEENRKDVRQ-LLTDCSTQHF 360 >Z81107-10|CAB03233.1| 646|Caenorhabditis elegans Hypothetical protein R07H5.2a protein. Length = 646 Score = 27.5 bits (58), Expect = 8.8 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +2 Query: 191 SSASIWIGRSVCFRSFFSSIKAKALDIVEKELGQFQQSIKTDAKLKEF 334 S+A+ GR+ C RS S+ +A L I+E+ +Q + TD + F Sbjct: 484 STAAFLKGRTECMRSATSATRAATLAILEENRKDVRQ-LLTDCSTQHF 530 >Z73103-12|CAJ90500.1| 476|Caenorhabditis elegans Hypothetical protein R07H5.2b protein. Length = 476 Score = 27.5 bits (58), Expect = 8.8 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +2 Query: 191 SSASIWIGRSVCFRSFFSSIKAKALDIVEKELGQFQQSIKTDAKLKEF 334 S+A+ GR+ C RS S+ +A L I+E+ +Q + TD + F Sbjct: 314 STAAFLKGRTECMRSATSATRAATLAILEENRKDVRQ-LLTDCSTQHF 360 >Z73103-11|CAA97431.1| 646|Caenorhabditis elegans Hypothetical protein R07H5.2a protein. Length = 646 Score = 27.5 bits (58), Expect = 8.8 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +2 Query: 191 SSASIWIGRSVCFRSFFSSIKAKALDIVEKELGQFQQSIKTDAKLKEF 334 S+A+ GR+ C RS S+ +A L I+E+ +Q + TD + F Sbjct: 484 STAAFLKGRTECMRSATSATRAATLAILEENRKDVRQ-LLTDCSTQHF 530 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,896,879 Number of Sequences: 27780 Number of extensions: 308523 Number of successful extensions: 818 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 788 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 818 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1455289764 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -