Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1084
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase su... 83 2e-16
U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase su... 83 2e-16
Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z81107-11|CAJ90502.1| 476|Caenorhabditis elegans Hypothetical p... 27 8.8
Z81107-10|CAB03233.1| 646|Caenorhabditis elegans Hypothetical p... 27 8.8
Z73103-12|CAJ90500.1| 476|Caenorhabditis elegans Hypothetical p... 27 8.8
Z73103-11|CAA97431.1| 646|Caenorhabditis elegans Hypothetical p... 27 8.8
>U80441-5|AAB37654.1| 207|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform a protein.
Length = 207
Score = 82.6 bits (195), Expect = 2e-16
Identities = 37/86 (43%), Positives = 59/86 (68%)
Frame = +2
Query: 251 KAKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLL 430
K LD + +L + K + K +EF+++PTLK + K A++ ++ K+ L+ TGN L
Sbjct: 44 KQNKLDQISTDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFL 103
Query: 431 GLLAENGRLDKLEAVINAFKIMMAAH 508
GLLAENGRL+KLE+V+++F+ +M AH
Sbjct: 104 GLLAENGRLNKLESVVSSFESIMRAH 129
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/41 (58%), Positives = 31/41 (75%), Gaps = 2/41 (4%)
Frame = +3
Query: 138 LLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASK 254
L+ R STS +A AQ+VK P+QV G+EGRYA+AL+SA K
Sbjct: 4 LMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHK 44
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 552 SSTEANLEAALKKFLKGNETLQLTAKVDPSLIGG 653
SS + L AL K K + L +T V PS++GG
Sbjct: 145 SSNQKALSDALSKIGKSGQKLTVTYAVKPSILGG 178
>U80441-4|AAR25649.1| 228|Caenorhabditis elegans Atp synthase
subunit protein 3,isoform b protein.
Length = 228
Score = 82.6 bits (195), Expect = 2e-16
Identities = 37/86 (43%), Positives = 59/86 (68%)
Frame = +2
Query: 251 KAKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPTTGNLL 430
K LD + +L + K + K +EF+++PTLK + K A++ ++ K+ L+ TGN L
Sbjct: 65 KQNKLDQISTDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFL 124
Query: 431 GLLAENGRLDKLEAVINAFKIMMAAH 508
GLLAENGRL+KLE+V+++F+ +M AH
Sbjct: 125 GLLAENGRLNKLESVVSSFESIMRAH 150
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Frame = +3
Query: 99 IFLNKIMSALKGNLLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASK 254
++L + + L+ R STS +A AQ+VK P+QV G+EGRYA+AL+SA K
Sbjct: 12 LYLTILHEKVMAQLMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHK 65
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 552 SSTEANLEAALKKFLKGNETLQLTAKVDPSLIGG 653
SS + L AL K K + L +T V PS++GG
Sbjct: 166 SSNQKALSDALSKIGKSGQKLTVTYAVKPSILGG 199
>Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical
protein F09B12.2 protein.
Length = 295
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 432 PSRLPVVGERLILLATCFNASTFMLLFN 349
P+ PV+GE ++ ATCF F L N
Sbjct: 51 PTWYPVMGEAWVIRATCFGVLVFNLYSN 78
>Z81107-11|CAJ90502.1| 476|Caenorhabditis elegans Hypothetical
protein R07H5.2b protein.
Length = 476
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 191 SSASIWIGRSVCFRSFFSSIKAKALDIVEKELGQFQQSIKTDAKLKEF 334
S+A+ GR+ C RS S+ +A L I+E+ +Q + TD + F
Sbjct: 314 STAAFLKGRTECMRSATSATRAATLAILEENRKDVRQ-LLTDCSTQHF 360
>Z81107-10|CAB03233.1| 646|Caenorhabditis elegans Hypothetical
protein R07H5.2a protein.
Length = 646
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 191 SSASIWIGRSVCFRSFFSSIKAKALDIVEKELGQFQQSIKTDAKLKEF 334
S+A+ GR+ C RS S+ +A L I+E+ +Q + TD + F
Sbjct: 484 STAAFLKGRTECMRSATSATRAATLAILEENRKDVRQ-LLTDCSTQHF 530
>Z73103-12|CAJ90500.1| 476|Caenorhabditis elegans Hypothetical
protein R07H5.2b protein.
Length = 476
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 191 SSASIWIGRSVCFRSFFSSIKAKALDIVEKELGQFQQSIKTDAKLKEF 334
S+A+ GR+ C RS S+ +A L I+E+ +Q + TD + F
Sbjct: 314 STAAFLKGRTECMRSATSATRAATLAILEENRKDVRQ-LLTDCSTQHF 360
>Z73103-11|CAA97431.1| 646|Caenorhabditis elegans Hypothetical
protein R07H5.2a protein.
Length = 646
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 191 SSASIWIGRSVCFRSFFSSIKAKALDIVEKELGQFQQSIKTDAKLKEF 334
S+A+ GR+ C RS S+ +A L I+E+ +Q + TD + F
Sbjct: 484 STAAFLKGRTECMRSATSATRAATLAILEENRKDVRQ-LLTDCSTQHF 530
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,896,879
Number of Sequences: 27780
Number of extensions: 308523
Number of successful extensions: 818
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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