Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1084
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13450.1 68418.m01548 ATP synthase delta chain, mitochondrial...    59   2e-09
At4g01840.1 68417.m00241 outward rectifying potassium channel, p...    30   1.5  
At1g17870.1 68414.m02211 expressed protein contains 6 transmembr...    28   6.2  

>At5g13450.1 68418.m01548 ATP synthase delta chain, mitochondrial,
           putative / H(+)-transporting two-sector ATPase, delta
           (OSCP) subunit, putative identical to SP|Q96251; similar
           to SP|P22778 ATP synthase delta chain, mitochondrial
           precursor (EC 3.6.3.14) (Oligomycin sensitivity
           conferral protein) (OSCP) {Ipomoea batatas}; contains
           Pfam profile PF00213: ATP synthase F1, delta subunit
          Length = 238

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 30/104 (28%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
 Frame = +2

Query: 236 FFSSIKAKALDIVEKELGQFQQSIKTDAKLKEFIINPTLKRSMKVDALKHVANKISLSPT 415
           + +++K  +L+ +E +L +  +++KT     +F  +P++ R  ++ A++   ++   +  
Sbjct: 65  YIAAVKMNSLEKIETDLSEMIEAMKTAPIFAQFTKDPSVPRGTRLAAIRDACDQAKFAEP 124

Query: 416 TGNLLGLLAENGRLDKLEAVINAFKIMMAAH--GVK*LVKLLQP 541
           T N L LLAENG+L  L+A++  F  +  AH   VK LV  + P
Sbjct: 125 TKNFLSLLAENGKLKNLDAIVKKFMQLTNAHRGDVKVLVTTVIP 168


>At4g01840.1 68417.m00241 outward rectifying potassium channel,
           putative (KCO5) identical to KCO5 protein [Arabidopsis
           thaliana] gi|6522947|emb|CAB62162; similar to kco1
           [Arabidopsis thaliana] gi|2230761|emb|CAA69158; member
           of the 2 pore, 4 transmembrane (2P/4TM) K+ channel
           family, PMID:11500563
          Length = 408

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 179 NGKTSSASIWIGRSVCFRSFFSSIKAKALDIVEKELGQFQQSIKTD 316
           +  +SSASI I RS+   SFF  I  + L +  ++L Q  Q  K D
Sbjct: 21  SSSSSSASITIPRSISNTSFFHEISQERLLLHHQDLEQSVQDDKED 66


>At1g17870.1 68414.m02211 expressed protein contains 6 transmembrane
           domains; similar to predicted metalloproteases
          Length = 573

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +2

Query: 275 EKELGQFQQSIKTDAKLKEFIINPTLKRSMKVD 373
           EK+  Q +   KTD + K+F+ NP+++ ++K++
Sbjct: 96  EKKSKQQEMDWKTDEEFKKFMGNPSIEAAIKLE 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,033,331
Number of Sequences: 28952
Number of extensions: 285920
Number of successful extensions: 738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)