Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1082
         (644 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SB68 Cluster: Chromosome undetermined SCAF14677, whol...    34   2.6  
UniRef50_Q4SB67 Cluster: Chromosome undetermined SCAF14677, whol...    34   2.6  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    33   7.8  

>UniRef50_Q4SB68 Cluster: Chromosome undetermined SCAF14677, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF14677,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 333

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +3

Query: 39  PPTLRCKF*DLSIVTTAAHPSNRNALLLHSRNRQGGGTYPRGLTRGPTTSSPNIVTFKIE 218
           PPT   KF  + +  T A P + N +  HS      G++P G + G    SP++V  +++
Sbjct: 42  PPTFTGKFCHIPVTMTPATPPSTNDIASHSEFLMPLGSHPEGASAG--APSPSMVKVRVQ 99


>UniRef50_Q4SB67 Cluster: Chromosome undetermined SCAF14677, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF14677,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 781

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +3

Query: 39  PPTLRCKF*DLSIVTTAAHPSNRNALLLHSRNRQGGGTYPRGLTRGPTTSSPNIVTFKIE 218
           PPT   KF  + +  T A P + N +  HS      G++P G + G    SP++V  +++
Sbjct: 22  PPTFTGKFCHIPVTMTPATPPSTNDIASHSEFLMPLGSHPEGASAG--APSPSMVKVRVQ 79



 Score = 33.5 bits (73), Expect = 4.5
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +3

Query: 39  PPTLRCKF*DLSIVTTAAHPSNRNALLLHSRNRQGGGTYPRGLTRGPTTSSPNIVTFKIE 218
           PPT   KF  + +  T A P + N +  HS      G++P G + G    SP++V  +++
Sbjct: 545 PPTFTGKFCHIPVTMTPATPPSTNDIASHSEFLMPLGSHPGGASAG--APSPSMVKVRVQ 602


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 14/19 (73%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +2

Query: 149 YLPARTHKRSYHQ*S-EYC 202
           YLPARTHKRSYH+    YC
Sbjct: 573 YLPARTHKRSYHRYQCSYC 591


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 577,923,027
Number of Sequences: 1657284
Number of extensions: 10755130
Number of successful extensions: 19420
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19411
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)