Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1082
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37544| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)               28   5.7  
SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)                     27   9.9  
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)                 27   9.9  

>SB_37544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 27  NVNAPPTLRCKF*DLSIVTTAAHPSNRNALLLHSRNRQGGGTYPRG 164
           +V  P T++    D ++ T  AH + R  ++ H R R+G  TYP G
Sbjct: 809 HVTLPYTIQRNVHDRTLHTVPAHKTFR--VVYHKRMRRGMRTYPNG 852


>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
          Length = 659

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 174 GPTTSSPNIVTFKIEEL 224
           GPTTS+PNIV +++  L
Sbjct: 444 GPTTSTPNIVNYRLHHL 460


>SB_21375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -2

Query: 418 RYVTRNSHTKRCYLLHIKFA*ASIYVDINKTIRYHNHITC-NLL*STYVRNIKKH 257
           R+VTR +     Y  H+      +       IRY NH+TC     + Y R++  H
Sbjct: 23  RHVTRYTRHVTHYTRHVTRYTGHVTRYTRHAIRYTNHVTCYKHYITCYTRHVTNH 77


>SB_38417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1019

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 85  RLPTLQTETHYCFTAEIDRAAV-PTR 159
           +LP L T  HYCF  E +R  + PT+
Sbjct: 324 QLPKLGTSDHYCFLVENNRPRIKPTK 349


>SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)
          Length = 359

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 85  RLPTLQTETHYCFTAEIDRAAV-PTR 159
           +LP L T  HYCF  E +R  + PT+
Sbjct: 89  QLPKLGTSDHYCFLVENNRPRIKPTK 114


>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
          Length = 867

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +1

Query: 85  RLPTLQTETHYCFTAEIDRAAV-PTR 159
           +LP L T  HYCF  E +R  + PT+
Sbjct: 324 QLPKLGTSDHYCFLVENNRPRIKPTK 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,379,108
Number of Sequences: 59808
Number of extensions: 349986
Number of successful extensions: 618
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)