Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1082
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21210.1 68417.m03066 expressed protein contains Pfam domain ...    29   3.5  
At4g01930.1 68417.m00257 DC1 domain-containing protein contains ...    27   8.1  

>At4g21210.1 68417.m03066 expressed protein contains Pfam domain
           PF03618: Domain of unknown function (DUF299)
          Length = 403

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 147 GTYPRGLTRGPTTSSPNIVTFK-IEELHFIGKYN 245
           GT P GL+RG T SS N   FK IE + F  K++
Sbjct: 219 GTNPSGLSRGITNSSLNEDYFKRIEAIEFTIKHD 252


>At4g01930.1 68417.m00257 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 492 CHVCELNLKKI---CIMCNINVTFIDVAYAPHLVTNVTK 599
           C++C +++K +   C +CN NV      Y P  V ++++
Sbjct: 81  CNLCGISIKSLFYNCEICNFNVHMYCAKYPPPQVIDISE 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,545,239
Number of Sequences: 28952
Number of extensions: 237400
Number of successful extensions: 363
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)