Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1080
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 118 5e-28
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 118 5e-28
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 27 1.7
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 2.3
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 5.3
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 25 7.0
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 25 9.3
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 118 bits (285), Expect = 5e-28
Identities = 50/76 (65%), Positives = 61/76 (80%)
Frame = +3
Query: 33 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 212
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60
Query: 213 TCQVAYSRIEGDHICA 260
TCQ+ SR+ GD++ A
Sbjct: 61 TCQIVSSRVNGDYVLA 76
Score = 56.4 bits (130), Expect = 3e-09
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +3
Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESIKFNAEVHRAHIFGLHV 641
GAMKGA DGGL +PHS RFPG+D E+ + + E R +I+G HV
Sbjct: 161 GAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHV 204
Score = 46.4 bits (105), Expect = 4e-06
Identities = 25/74 (33%), Positives = 34/74 (45%)
Frame = +2
Query: 254 LCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 433
L A+S ELPRYG+K GL N+ AAY+TG E
Sbjct: 75 LAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEA 134
Query: 434 VDNGPGAFRCYLDV 475
+++GP F+ +LDV
Sbjct: 135 IEDGPRPFKVFLDV 148
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 118 bits (285), Expect = 5e-28
Identities = 50/76 (65%), Positives = 61/76 (80%)
Frame = +3
Query: 33 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 212
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60
Query: 213 TCQVAYSRIEGDHICA 260
TCQ+ SR+ GD++ A
Sbjct: 61 TCQIVSSRVNGDYVLA 76
Score = 56.4 bits (130), Expect = 3e-09
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +3
Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESIKFNAEVHRAHIFGLHV 641
GAMKGA DGGL +PHS RFPG+D E+ + + E R +I+G HV
Sbjct: 161 GAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHV 204
Score = 46.4 bits (105), Expect = 4e-06
Identities = 25/74 (33%), Positives = 34/74 (45%)
Frame = +2
Query: 254 LCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 433
L A+S ELPRYG+K GL N+ AAY+TG E
Sbjct: 75 LAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEA 134
Query: 434 VDNGPGAFRCYLDV 475
+++GP F+ +LDV
Sbjct: 135 IEDGPRPFKVFLDV 148
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/54 (22%), Positives = 23/54 (42%)
Frame = +3
Query: 351 EDCFKDLDLTPYTLAQQMSQVMNTMLNLSTMDQEHLDVIWMWLSTHHYWCSCLG 512
EDC L + Q +LNL T++ ++++ +++W C G
Sbjct: 1665 EDCHDSLSWKTFIHPDHHHQFQEKLLNLKTLELGDIELLLRMEDGNYHWHLCRG 1718
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 362 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 270
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Frame = -1
Query: 320 QHNLSDQP-SHHNVATHV-NKQRTNMVTFNPR 231
QH LSDQP S +N ++V +++R+N V+ R
Sbjct: 831 QHKLSDQPRSRNNSISNVSHRERSNSVSSKSR 862
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -1
Query: 161 FVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHIL---NLSYKVAS 3
F +L T + +SF F+T + + + LF H F+ S ++ N+ Y+V S
Sbjct: 469 FATILAAFGTTLLSLSFVFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVVS 524
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 338 DQLNMLQHNLSDQPSHHNVATHVNKQRTNMVTFN 237
+ N+ N+S++P HH+ + NK+ TN+ N
Sbjct: 105 ESTNLDDLNMSEEPKHHDSS---NKESTNLDNSN 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,971
Number of Sequences: 5004
Number of extensions: 53971
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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