BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1080 (641 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 102 2e-22 01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 100 1e-21 03_01_0456 - 3495537-3496205,3496304-3496364,3496447-3496829,349... 28 5.5 01_01_0182 - 1561779-1561873,1561977-1562050,1562140-1562207,156... 28 5.5 09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012,937... 28 7.2 05_07_0050 + 27332855-27333009,27333725-27333790,27333971-273340... 27 9.6 03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353... 27 9.6 02_04_0381 - 22497519-22497769,22498157-22498247 27 9.6 >01_06_1659 + 38961637-38961639,38962361-38962433,38962531-38962613, 38962732-38962858,38962950-38963029,38963112-38963228, 38963393-38963527,38963714-38963883,38963970-38964087 Length = 301 Score = 102 bits (245), Expect = 2e-22 Identities = 48/75 (64%), Positives = 56/75 (74%) Frame = +3 Query: 36 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 215 GFVK K YFKR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T Sbjct: 3 GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59 Query: 216 CQVAYSRIEGDHICA 260 Q+ Y+ I GD + A Sbjct: 60 AQIVYATIAGDIVMA 74 Score = 59.3 bits (137), Expect = 3e-09 Identities = 33/74 (44%), Positives = 37/74 (50%) Frame = +2 Query: 254 LCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 433 + AAYSHELPRYG++VGLTNYAAAY TG +Y VEP Sbjct: 73 MAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEP 132 Query: 434 VDNGPGAFRCYLDV 475 D FR LDV Sbjct: 133 ADE-RRPFRALLDV 145 Score = 58.0 bits (134), Expect = 6e-09 Identities = 22/44 (50%), Positives = 35/44 (79%) Frame = +3 Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESIKFNAEVHRAHIFGLHV 641 GA+KGA+DGGL++PHS KRF G+ + + ++++HR +I+G HV Sbjct: 158 GALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHV 201 >01_06_1660 + 38966999-38967001,38967685-38967757,38967841-38967923, 38968042-38968168,38968260-38968339,38968428-38968544, 38968711-38968845,38969046-38969215,38969300-38969417 Length = 301 Score = 100 bits (239), Expect = 1e-21 Identities = 47/75 (62%), Positives = 55/75 (73%) Frame = +3 Query: 36 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 215 GFVK K Y KR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T Sbjct: 3 GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59 Query: 216 CQVAYSRIEGDHICA 260 Q+ Y+ I GD + A Sbjct: 60 AQIVYATIAGDIVMA 74 Score = 59.3 bits (137), Expect = 3e-09 Identities = 33/74 (44%), Positives = 37/74 (50%) Frame = +2 Query: 254 LCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 433 + AAYSHELPRYG++VGLTNYAAAY TG +Y VEP Sbjct: 73 MAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEP 132 Query: 434 VDNGPGAFRCYLDV 475 D FR LDV Sbjct: 133 ADE-RRPFRALLDV 145 Score = 58.0 bits (134), Expect = 6e-09 Identities = 22/44 (50%), Positives = 35/44 (79%) Frame = +3 Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESIKFNAEVHRAHIFGLHV 641 GA+KGA+DGGL++PHS KRF G+ + + ++++HR +I+G HV Sbjct: 158 GALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHV 201 >03_01_0456 - 3495537-3496205,3496304-3496364,3496447-3496829, 3496924-3497613 Length = 600 Score = 28.3 bits (60), Expect = 5.5 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = +3 Query: 501 SCLGAMKGAVDGGLNVPHSIKRFPGYDAESIKFNAEVHRAH 623 SCLG G GLN+ H + PG S+ +A H H Sbjct: 479 SCLGGAMGTYATGLNLNHHV-HHPGAGGTSLLHDALHHHHH 518 >01_01_0182 - 1561779-1561873,1561977-1562050,1562140-1562207, 1562279-1562371,1562521-1562604,1562697-1562752, 1562843-1562950,1563051-1563225,1563237-1563422 Length = 312 Score = 28.3 bits (60), Expect = 5.5 Identities = 16/64 (25%), Positives = 31/64 (48%) Frame = -1 Query: 224 HLACYIFVGETHNQTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNF 45 HL Y + + ++ FR +NN +TS ++++ T+P Y + +LF+ H Sbjct: 113 HLCSYTYDRDCKDEDSFRGRCVAGAINN--YTSQLLTYDATSPSTQYNLTQALLFLAHFV 170 Query: 44 NESH 33 + H Sbjct: 171 GDIH 174 >09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012, 9370960-9371022 Length = 1203 Score = 27.9 bits (59), Expect = 7.2 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 1/100 (1%) Frame = -1 Query: 365 FEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTNMVTFNPRVGHLACYIFVGETHN 186 FEA+ + L ML+H + S H++ ++ R V+F R+ +++C +++ + + Sbjct: 1018 FEALKKIELFNLKMLKHIKCFRLSPHDMFPSLSVLR---VSFCDRLKNISCTMYLSKLQH 1074 Query: 185 QTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEF-YLVPLE 69 + C + S + +FP L F YL LE Sbjct: 1075 LEVSYCNSITQAFGHNMNKSTVPTFPCLRYLSFAYLDGLE 1114 >05_07_0050 + 27332855-27333009,27333725-27333790,27333971-27334030, 27334425-27334515,27334893-27335073,27336037-27336128, 27336672-27336995 Length = 322 Score = 27.5 bits (58), Expect = 9.6 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = -1 Query: 212 YIFVGETHN-QTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNE 39 Y F+G Q +F CV+F+ V N F + P PL Y + L L + E Sbjct: 234 YPFMGPLRFVQVLFLCVVFMTVELNTFFLKFCLWIPPRNPLVVYRLILWWLIAIPTIRE 292 >03_03_0279 - 16134422-16134608,16134703-16134947,16135046-16135364, 16135451-16135675,16135780-16135946,16136030-16136146, 16136234-16136407,16136489-16136584,16136669-16136885, 16137005-16137123,16137249-16137441,16137562-16137713, 16137809-16137938,16138667-16138776 Length = 816 Score = 27.5 bits (58), Expect = 9.6 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = -2 Query: 220 WHVTSLLERRTIRRYLGVLY 161 W S LERR RRYL +LY Sbjct: 775 WKYVSNLERRETRRYLEMLY 794 >02_04_0381 - 22497519-22497769,22498157-22498247 Length = 113 Score = 27.5 bits (58), Expect = 9.6 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +1 Query: 289 WCEGWSDKLCCSIFNWSAISTKTASK 366 +C+G+ DK CC +WS K SK Sbjct: 90 YCDGYDDKSCCD--DWSGDCHKCCSK 113 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,358,635 Number of Sequences: 37544 Number of extensions: 350842 Number of successful extensions: 756 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 737 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 752 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1584867848 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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