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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1080
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   102   2e-22
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   100   1e-21
03_01_0456 - 3495537-3496205,3496304-3496364,3496447-3496829,349...    28   5.5  
01_01_0182 - 1561779-1561873,1561977-1562050,1562140-1562207,156...    28   5.5  
09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012,937...    28   7.2  
05_07_0050 + 27332855-27333009,27333725-27333790,27333971-273340...    27   9.6  
03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353...    27   9.6  
02_04_0381 - 22497519-22497769,22498157-22498247                       27   9.6  

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  102 bits (245), Expect = 2e-22
 Identities = 48/75 (64%), Positives = 56/75 (74%)
 Frame = +3

Query: 36  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 215
           GFVK  K   YFKR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 216 CQVAYSRIEGDHICA 260
            Q+ Y+ I GD + A
Sbjct: 60  AQIVYATIAGDIVMA 74



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 33/74 (44%), Positives = 37/74 (50%)
 Frame = +2

Query: 254 LCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 433
           + AAYSHELPRYG++VGLTNYAAAY TG                          +Y VEP
Sbjct: 73  MAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEP 132

Query: 434 VDNGPGAFRCYLDV 475
            D     FR  LDV
Sbjct: 133 ADE-RRPFRALLDV 145



 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 22/44 (50%), Positives = 35/44 (79%)
 Frame = +3

Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESIKFNAEVHRAHIFGLHV 641
           GA+KGA+DGGL++PHS KRF G+  +  + ++++HR +I+G HV
Sbjct: 158 GALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHV 201


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  100 bits (239), Expect = 1e-21
 Identities = 47/75 (62%), Positives = 55/75 (73%)
 Frame = +3

Query: 36  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 215
           GFVK  K   Y KR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 216 CQVAYSRIEGDHICA 260
            Q+ Y+ I GD + A
Sbjct: 60  AQIVYATIAGDIVMA 74



 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 33/74 (44%), Positives = 37/74 (50%)
 Frame = +2

Query: 254 LCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 433
           + AAYSHELPRYG++VGLTNYAAAY TG                          +Y VEP
Sbjct: 73  MAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEP 132

Query: 434 VDNGPGAFRCYLDV 475
            D     FR  LDV
Sbjct: 133 ADE-RRPFRALLDV 145



 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 22/44 (50%), Positives = 35/44 (79%)
 Frame = +3

Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESIKFNAEVHRAHIFGLHV 641
           GA+KGA+DGGL++PHS KRF G+  +  + ++++HR +I+G HV
Sbjct: 158 GALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHV 201


>03_01_0456 -
           3495537-3496205,3496304-3496364,3496447-3496829,
           3496924-3497613
          Length = 600

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 501 SCLGAMKGAVDGGLNVPHSIKRFPGYDAESIKFNAEVHRAH 623
           SCLG   G    GLN+ H +   PG    S+  +A  H  H
Sbjct: 479 SCLGGAMGTYATGLNLNHHV-HHPGAGGTSLLHDALHHHHH 518


>01_01_0182 -
           1561779-1561873,1561977-1562050,1562140-1562207,
           1562279-1562371,1562521-1562604,1562697-1562752,
           1562843-1562950,1563051-1563225,1563237-1563422
          Length = 312

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -1

Query: 224 HLACYIFVGETHNQTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNF 45
           HL  Y +  +  ++  FR       +NN  +TS ++++  T+P   Y +   +LF+ H  
Sbjct: 113 HLCSYTYDRDCKDEDSFRGRCVAGAINN--YTSQLLTYDATSPSTQYNLTQALLFLAHFV 170

Query: 44  NESH 33
            + H
Sbjct: 171 GDIH 174


>09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012,
            9370960-9371022
          Length = 1203

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
 Frame = -1

Query: 365  FEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTNMVTFNPRVGHLACYIFVGETHN 186
            FEA+  +    L ML+H    + S H++   ++  R   V+F  R+ +++C +++ +  +
Sbjct: 1018 FEALKKIELFNLKMLKHIKCFRLSPHDMFPSLSVLR---VSFCDRLKNISCTMYLSKLQH 1074

Query: 185  QTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEF-YLVPLE 69
              +  C        +    S + +FP    L F YL  LE
Sbjct: 1075 LEVSYCNSITQAFGHNMNKSTVPTFPCLRYLSFAYLDGLE 1114


>05_07_0050 +
           27332855-27333009,27333725-27333790,27333971-27334030,
           27334425-27334515,27334893-27335073,27336037-27336128,
           27336672-27336995
          Length = 322

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -1

Query: 212 YIFVGETHN-QTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNE 39
           Y F+G     Q +F CV+F+ V  N  F    +  P   PL  Y + L  L  +    E
Sbjct: 234 YPFMGPLRFVQVLFLCVVFMTVELNTFFLKFCLWIPPRNPLVVYRLILWWLIAIPTIRE 292


>03_03_0279 -
           16134422-16134608,16134703-16134947,16135046-16135364,
           16135451-16135675,16135780-16135946,16136030-16136146,
           16136234-16136407,16136489-16136584,16136669-16136885,
           16137005-16137123,16137249-16137441,16137562-16137713,
           16137809-16137938,16138667-16138776
          Length = 816

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 220 WHVTSLLERRTIRRYLGVLY 161
           W   S LERR  RRYL +LY
Sbjct: 775 WKYVSNLERRETRRYLEMLY 794


>02_04_0381 - 22497519-22497769,22498157-22498247
          Length = 113

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 289 WCEGWSDKLCCSIFNWSAISTKTASK 366
           +C+G+ DK CC   +WS    K  SK
Sbjct: 90  YCDGYDDKSCCD--DWSGDCHKCCSK 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,358,635
Number of Sequences: 37544
Number of extensions: 350842
Number of successful extensions: 756
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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