Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1080
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 102 2e-22
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 100 1e-21
03_01_0456 - 3495537-3496205,3496304-3496364,3496447-3496829,349... 28 5.5
01_01_0182 - 1561779-1561873,1561977-1562050,1562140-1562207,156... 28 5.5
09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012,937... 28 7.2
05_07_0050 + 27332855-27333009,27333725-27333790,27333971-273340... 27 9.6
03_03_0279 - 16134422-16134608,16134703-16134947,16135046-161353... 27 9.6
02_04_0381 - 22497519-22497769,22498157-22498247 27 9.6
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 102 bits (245), Expect = 2e-22
Identities = 48/75 (64%), Positives = 56/75 (74%)
Frame = +3
Query: 36 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 215
GFVK K YFKR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 216 CQVAYSRIEGDHICA 260
Q+ Y+ I GD + A
Sbjct: 60 AQIVYATIAGDIVMA 74
Score = 59.3 bits (137), Expect = 3e-09
Identities = 33/74 (44%), Positives = 37/74 (50%)
Frame = +2
Query: 254 LCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 433
+ AAYSHELPRYG++VGLTNYAAAY TG +Y VEP
Sbjct: 73 MAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEP 132
Query: 434 VDNGPGAFRCYLDV 475
D FR LDV
Sbjct: 133 ADE-RRPFRALLDV 145
Score = 58.0 bits (134), Expect = 6e-09
Identities = 22/44 (50%), Positives = 35/44 (79%)
Frame = +3
Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESIKFNAEVHRAHIFGLHV 641
GA+KGA+DGGL++PHS KRF G+ + + ++++HR +I+G HV
Sbjct: 158 GALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHV 201
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 100 bits (239), Expect = 1e-21
Identities = 47/75 (62%), Positives = 55/75 (73%)
Frame = +3
Query: 36 GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 215
GFVK K Y KR+QVKFKRRR+GKTDY AR RL QDKNKYNTPKYR + +NKD+T
Sbjct: 3 GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59
Query: 216 CQVAYSRIEGDHICA 260
Q+ Y+ I GD + A
Sbjct: 60 AQIVYATIAGDIVMA 74
Score = 59.3 bits (137), Expect = 3e-09
Identities = 33/74 (44%), Positives = 37/74 (50%)
Frame = +2
Query: 254 LCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 433
+ AAYSHELPRYG++VGLTNYAAAY TG +Y VEP
Sbjct: 73 MAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEP 132
Query: 434 VDNGPGAFRCYLDV 475
D FR LDV
Sbjct: 133 ADE-RRPFRALLDV 145
Score = 58.0 bits (134), Expect = 6e-09
Identities = 22/44 (50%), Positives = 35/44 (79%)
Frame = +3
Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESIKFNAEVHRAHIFGLHV 641
GA+KGA+DGGL++PHS KRF G+ + + ++++HR +I+G HV
Sbjct: 158 GALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHV 201
>03_01_0456 -
3495537-3496205,3496304-3496364,3496447-3496829,
3496924-3497613
Length = 600
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 501 SCLGAMKGAVDGGLNVPHSIKRFPGYDAESIKFNAEVHRAH 623
SCLG G GLN+ H + PG S+ +A H H
Sbjct: 479 SCLGGAMGTYATGLNLNHHV-HHPGAGGTSLLHDALHHHHH 518
>01_01_0182 -
1561779-1561873,1561977-1562050,1562140-1562207,
1562279-1562371,1562521-1562604,1562697-1562752,
1562843-1562950,1563051-1563225,1563237-1563422
Length = 312
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -1
Query: 224 HLACYIFVGETHNQTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNF 45
HL Y + + ++ FR +NN +TS ++++ T+P Y + +LF+ H
Sbjct: 113 HLCSYTYDRDCKDEDSFRGRCVAGAINN--YTSQLLTYDATSPSTQYNLTQALLFLAHFV 170
Query: 44 NESH 33
+ H
Sbjct: 171 GDIH 174
>09_02_0434 + 9365038-9366150,9367352-9368680,9368906-9370012,
9370960-9371022
Length = 1203
Score = 27.9 bits (59), Expect = 7.2
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = -1
Query: 365 FEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTNMVTFNPRVGHLACYIFVGETHN 186
FEA+ + L ML+H + S H++ ++ R V+F R+ +++C +++ + +
Sbjct: 1018 FEALKKIELFNLKMLKHIKCFRLSPHDMFPSLSVLR---VSFCDRLKNISCTMYLSKLQH 1074
Query: 185 QTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEF-YLVPLE 69
+ C + S + +FP L F YL LE
Sbjct: 1075 LEVSYCNSITQAFGHNMNKSTVPTFPCLRYLSFAYLDGLE 1114
>05_07_0050 +
27332855-27333009,27333725-27333790,27333971-27334030,
27334425-27334515,27334893-27335073,27336037-27336128,
27336672-27336995
Length = 322
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -1
Query: 212 YIFVGETHN-QTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNE 39
Y F+G Q +F CV+F+ V N F + P PL Y + L L + E
Sbjct: 234 YPFMGPLRFVQVLFLCVVFMTVELNTFFLKFCLWIPPRNPLVVYRLILWWLIAIPTIRE 292
>03_03_0279 -
16134422-16134608,16134703-16134947,16135046-16135364,
16135451-16135675,16135780-16135946,16136030-16136146,
16136234-16136407,16136489-16136584,16136669-16136885,
16137005-16137123,16137249-16137441,16137562-16137713,
16137809-16137938,16138667-16138776
Length = 816
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 220 WHVTSLLERRTIRRYLGVLY 161
W S LERR RRYL +LY
Sbjct: 775 WKYVSNLERRETRRYLEMLY 794
>02_04_0381 - 22497519-22497769,22498157-22498247
Length = 113
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 289 WCEGWSDKLCCSIFNWSAISTKTASK 366
+C+G+ DK CC +WS K SK
Sbjct: 90 YCDGYDDKSCCD--DWSGDCHKCCSK 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,358,635
Number of Sequences: 37544
Number of extensions: 350842
Number of successful extensions: 756
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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