Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1080
(641 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 85 3e-17
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 81 1e-15
SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 30 1.8
SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 30 1.8
SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10) 30 1.8
SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 30 1.8
SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 30 1.8
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065) 28 5.6
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23) 28 5.6
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029) 28 5.6
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_21140| Best HMM Match : Peptidase_C14 (HMM E-Value=0) 28 7.4
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 28 7.4
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14) 27 9.8
SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014) 27 9.8
SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_13736| Best HMM Match : PHD (HMM E-Value=0.001) 27 9.8
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001) 27 9.8
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24) 27 9.8
SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001) 27 9.8
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 85.4 bits (202), Expect = 3e-17
Identities = 40/74 (54%), Positives = 44/74 (59%)
Frame = +2
Query: 254 LCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 433
+CAAY+HELPRYGVKVGLTNYAAAY TG EYNVE
Sbjct: 12 ICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVES 71
Query: 434 VDNGPGAFRCYLDV 475
+D PGAFRC+LDV
Sbjct: 72 IDGSPGAFRCFLDV 85
Score = 32.7 bits (71), Expect = 0.26
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 510 GAMKGAVDGGLNVPH 554
GA+KGAVDGGL +PH
Sbjct: 98 GALKGAVDGGLEIPH 112
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 80.6 bits (190), Expect = 1e-15
Identities = 32/42 (76%), Positives = 38/42 (90%)
Frame = +3
Query: 96 RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 221
RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17 RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58
Score = 80.2 bits (189), Expect = 1e-15
Identities = 34/44 (77%), Positives = 39/44 (88%)
Frame = +3
Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESIKFNAEVHRAHIFGLHV 641
GA+KGAVDGGL +PHS+KRFPGYD+ES F+AEVHR HIFG HV
Sbjct: 193 GALKGAVDGGLEIPHSMKRFPGYDSESKDFSAEVHRNHIFGKHV 236
Score = 78.2 bits (184), Expect = 5e-15
Identities = 38/74 (51%), Positives = 42/74 (56%)
Frame = +2
Query: 254 LCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 433
L +AY+HELP +GVKVGLTNYAAAY TG EYNVE
Sbjct: 107 LASAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVES 166
Query: 434 VDNGPGAFRCYLDV 475
VD PGAFRC+LDV
Sbjct: 167 VDGSPGAFRCFLDV 180
>SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1379
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 599 ELYGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 477
+ +GF + E D MR + +T++S APV++R K
Sbjct: 564 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 604
>SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 266
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 599 ELYGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 477
+ +GF + E D MR + +T++S APV++R K
Sbjct: 43 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83
>SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 266
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 599 ELYGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 477
+ +GF + E D MR + +T++S APV++R K
Sbjct: 43 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83
>SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 599 ELYGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 477
+ +GF + E D MR + +T++S APV++R K
Sbjct: 43 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83
>SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)
Length = 475
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 599 ELYGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 477
+ +GF + E D MR + +T++S APV++R K
Sbjct: 365 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 405
>SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 780
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 599 ELYGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 477
+ +GF + E D MR + +T++S APV++R K
Sbjct: 212 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 252
>SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1244
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 599 ELYGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 477
+ +GF + E D MR + +T++S APV++R K
Sbjct: 881 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 921
>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1515
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 599 ELYGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 477
+ +GF + E D MR + +T++S APV++R K
Sbjct: 1159 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 1199
>SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)
Length = 557
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -1
Query: 371 QVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTNMVTFNPRVGHLACYIF 204
++ + ++L D ++ L PS A+ +NKQ T V+F P G LA F
Sbjct: 180 KIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVSFKPDPGALAVDTF 235
>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
Length = 232
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 119 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 12
ISFPFTT E Y +V F+ N LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154
>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
Length = 1769
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -1
Query: 371 QVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTNMVTFNPRVGHLACYIF 204
++ + ++L D ++ L PS A+ +NKQ T V+F P G LA F
Sbjct: 340 KIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVSFKPDPGALAVDTF 395
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 51 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 146
VK+K+ KR K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = -1
Query: 278 THVNKQRTNMVTFNPRVGHLACY---IFVGETHNQTIFRCVIFVLVLNNEAFTSIII-SF 111
+HV K TN+V+ PR A Y I+ E N + C + VL+ + +++ +I SF
Sbjct: 280 SHVFKVMTNVVSMRPRFDFTADYLVRIYRAECVNLRL-HCNLIKGVLDKQGYSAFLIASF 338
Query: 110 P 108
P
Sbjct: 339 P 339
>SB_21140| Best HMM Match : Peptidase_C14 (HMM E-Value=0)
Length = 377
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +3
Query: 402 MSQVMNTMLNLSTMDQEHLDVIWMWLSTHHYWCSCLGAMKGAVDGGL-NVPHSIKRFPGY 578
M Q+ NT+ + + + ++ D + + + +H G + G VDGGL N+ I F GY
Sbjct: 207 MRQMKNTLFDFAKNNHKNSDSVVVCILSH----GLEGRIYG-VDGGLLNISDVISMFNGY 261
Query: 579 DAESI 593
A+ +
Sbjct: 262 QAKDL 266
>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4700
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/71 (25%), Positives = 27/71 (38%)
Frame = +3
Query: 375 LTPYTLAQQMSQVMNTMLNLSTMDQEHLDVIWMWLSTHHYWCSCLGAMKGAVDGGLNVPH 554
+T + + +V + LST D VI +W W G+ D +P
Sbjct: 1867 MTSKYIGHFLEEVTSWQKKLSTADS----VITIWFEVQRTWSHLESIFIGSEDIRNQLPE 1922
Query: 555 SIKRFPGYDAE 587
KRF G D +
Sbjct: 1923 DSKRFDGIDVD 1933
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 36 GFVKVVKNKQYFKRYQVKFKRRREGKTDY 122
GF++ +K + RY VK R R DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118
>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
Length = 961
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 256 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 372
V+C + +C+ W CCSI N S + +S +W
Sbjct: 91 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 129
>SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)
Length = 598
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 256 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 372
V+C + +C+ W CCSI N S + +S +W
Sbjct: 104 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 142
>SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 818
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/73 (20%), Positives = 38/73 (52%)
Frame = +3
Query: 45 KVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 224
K +K+ Q+ V+F+ +E + D + R + ++QD N T + ++++ N+ ++
Sbjct: 400 KTMKSMQFKNEELVRFQYNQEDQVDDFKRLKKLIQD-NGLPTIEQVIVLQRQNESYREEL 458
Query: 225 AYSRIEGDHICAL 263
R E + + ++
Sbjct: 459 MNERKEKERLLSI 471
>SB_13736| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 226
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 256 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 372
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 623
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 256 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 372
V+C + +C+ W CCSI N S + +S +W
Sbjct: 60 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 98
>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 256 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 372
V+C + +C+ W CCSI N S + +S +W
Sbjct: 359 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 397
>SB_46260| Best HMM Match : CUB (HMM E-Value=7.3e-24)
Length = 830
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 256 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 372
V+C + +C+ W CCSI N S + +S +W
Sbjct: 645 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 683
>SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 256 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 372
V+C + +C+ W CCSI N S + +S +W
Sbjct: 184 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 222
>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 560
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 256 VRCLFT*VATLWCEGWSDKLCCSIFNWSAISTKTASKTW 372
V+C + +C+ W CCSI N S + +S +W
Sbjct: 23 VKCNQKGIQCDYCDAWYHTKCCSISNESYNTLANSSCSW 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,289,937
Number of Sequences: 59808
Number of extensions: 422971
Number of successful extensions: 1186
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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