Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1080
         (641 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...   149   1e-37
AY028785-1|AAK32959.1|  509|Anopheles gambiae cytochrome P450 pr...    24   4.7  
AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein ...    23   6.2  
AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein p...    23   6.2  

>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score =  149 bits (360), Expect = 1e-37
 Identities = 67/81 (82%), Positives = 74/81 (91%), Gaps = 1/81 (1%)
 Frame = +3

Query: 33  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 212
           MGFVKVVKNKQYFKRYQV+F+RRREGKTDYYARKRL+ QDKNKYNTPK+RLIVRLSN+D+
Sbjct: 1   MGFVKVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKFRLIVRLSNRDI 60

Query: 213 TCQVAYSRIEGDHI-CALLIH 272
           TCQ+AY RIEGD I CA   H
Sbjct: 61  TCQIAYRRIEGDRIVCAAYSH 81



 Score = 87.8 bits (208), Expect = 3e-19
 Identities = 43/74 (58%), Positives = 44/74 (59%)
 Frame = +2

Query: 254 LCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 433
           +CAAYSHELPRYGVKVGLTNYAAAY TG                          EY VEP
Sbjct: 75  VCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVEP 134

Query: 434 VDNGPGAFRCYLDV 475
           VD GP AFRCYLDV
Sbjct: 135 VDEGPAAFRCYLDV 148



 Score = 85.8 bits (203), Expect = 1e-18
 Identities = 36/44 (81%), Positives = 40/44 (90%)
 Frame = +3

Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESIKFNAEVHRAHIFGLHV 641
           GAMKGAVDGGLN+PHS+KRFPGY AE+  FNAE+HR HIFGLHV
Sbjct: 161 GAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEMHRDHIFGLHV 204


>AY028785-1|AAK32959.1|  509|Anopheles gambiae cytochrome P450
           protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 375 LTPYTLAQQMSQVMNTMLNLSTMDQEHL 458
           LTP   + +M Q+  TML ++T    HL
Sbjct: 137 LTPTFTSGRMKQMFGTMLQVATELHRHL 164


>AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein
           protein.
          Length = 705

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 484 VLSHIQITSKCSWSIVDRF 428
           VL+ I   + C W+++DRF
Sbjct: 305 VLALIAAVAACLWAVLDRF 323


>AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein
           protein.
          Length = 344

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 255 KYGHLQSESRPPGMLHLCWR 196
           K GH     R P   +LCW+
Sbjct: 282 KVGHTSYHCREPDRSNLCWK 301


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,088
Number of Sequences: 2352
Number of extensions: 14820
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63141405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)