Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1080
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   136   2e-32
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   8.6  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  136 bits (328), Expect = 2e-32
 Identities = 61/76 (80%), Positives = 68/76 (89%)
 Frame = +3

Query: 33  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 212
           MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60

Query: 213 TCQVAYSRIEGDHICA 260
             Q+AYS+IEGD + A
Sbjct: 61  VAQLAYSKIEGDVVVA 76



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 26/42 (61%), Positives = 30/42 (71%)
 Frame = +3

Query: 516 MKGAVDGGLNVPHSIKRFPGYDAESIKFNAEVHRAHIFGLHV 641
           MKG  DGG+NVPHS  RF G+D ES ++NAE HR  I G HV
Sbjct: 162 MKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHV 203



 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 30/74 (40%), Positives = 38/74 (51%)
 Frame = +2

Query: 254 LCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 433
           + +AYSHELPRYG+KVGLTNYAAAY+TG                          +YNVE 
Sbjct: 75  VASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEE 134

Query: 434 VDNGPGAFRCYLDV 475
            +     F+  LD+
Sbjct: 135 -EGDRAPFKAVLDI 147


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 243  LQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 154
            ++ + + P   HLC R+++  DI  CYI CS
Sbjct: 988  MEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 243  LQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 154
            ++ + + P   HLC R+++  DI  CYI CS
Sbjct: 988  MEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,936,128
Number of Sequences: 27780
Number of extensions: 309887
Number of successful extensions: 750
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)