Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1080
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    26   0.27 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    26   0.27 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.3  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   3.3  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   3.3  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 54  KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKY 179
           KN++ +++Y+   K R   +T+    K   +   N YN   Y
Sbjct: 273 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 314


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 54  KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKY 179
           KN++ +++Y+   K R   +T+    K   +   N YN   Y
Sbjct: 284 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 325


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 114 TDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAY 230
           TD   RK ++ +++ K ++    ++V + N+D    +AY
Sbjct: 288 TDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDCGSAIAY 326


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 491 LLVLVSWSYEGCC*RWPQCSSFHQK 565
           LL+   WS       W  CSSF Q+
Sbjct: 401 LLLDADWSVNAGMWMWLSCSSFFQQ 425


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 523 PFIAPRHEHQ*WCVLSHIQITSKCSWS-IVDRF 428
           P  +P    Q   VLSHIQ T    WS IV ++
Sbjct: 81  PQCSPEETRQIKKVLSHIQRTYPKEWSKIVQQY 113


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 523 PFIAPRHEHQ*WCVLSHIQITSKCSWS-IVDRF 428
           P  +P    Q   VLSHIQ T    WS IV ++
Sbjct: 81  PQCSPEETRQIKKVLSHIQRTYPKEWSKIVQQY 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,798
Number of Sequences: 438
Number of extensions: 3793
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)