Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1080
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   106   1e-23
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   105   2e-23
At5g20550.1 68418.m02440 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   4.6  
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr...    28   4.6  
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr...    28   4.6  
At3g47200.1 68416.m05125 expressed protein contains Pfam profile...    28   6.1  
At2g36610.1 68415.m04488 homeobox-leucine zipper family protein ...    27   8.0  

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  106 bits (255), Expect = 1e-23
 Identities = 48/76 (63%), Positives = 58/76 (76%)
 Frame = +3

Query: 33  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 212
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 213 TCQVAYSRIEGDHICA 260
             Q+  + I GD + A
Sbjct: 61  VAQIVSASIAGDIVKA 76



 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 25/44 (56%), Positives = 36/44 (81%)
 Frame = +3

Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESIKFNAEVHRAHIFGLHV 641
           GA+KGA+DGGL++PHS KRF G+  E+ + +AE+HR +I+G HV
Sbjct: 160 GALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHV 203



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 29/72 (40%), Positives = 37/72 (51%)
 Frame = +2

Query: 260 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 439
           +AY+HELP+YG+ VGLTNYAAAY TG                          +++VEP D
Sbjct: 77  SAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTD 136

Query: 440 NGPGAFRCYLDV 475
           +    FR  LDV
Sbjct: 137 S-RRPFRALLDV 147


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  105 bits (253), Expect = 2e-23
 Identities = 48/76 (63%), Positives = 58/76 (76%)
 Frame = +3

Query: 33  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 212
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 213 TCQVAYSRIEGDHICA 260
             Q+  + I GD + A
Sbjct: 61  VAQIVSASIAGDIVKA 76



 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 25/44 (56%), Positives = 36/44 (81%)
 Frame = +3

Query: 510 GAMKGAVDGGLNVPHSIKRFPGYDAESIKFNAEVHRAHIFGLHV 641
           GA+KGA+DGGL++PHS KRF G+  E+ + +AE+HR +I+G HV
Sbjct: 160 GALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHV 203



 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 29/72 (40%), Positives = 37/72 (51%)
 Frame = +2

Query: 260 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 439
           +AY+HELP+YG+ VGLTNYAAAY TG                          +++VEP D
Sbjct: 77  SAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTD 136

Query: 440 NGPGAFRCYLDV 475
           +    FR  LDV
Sbjct: 137 S-RRPFRALLDV 147


>At5g20550.1 68418.m02440 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to leucoanthocyanidin dioxygenase
           [Malus domestica][SP|P51091], flavonol synthase [Petunia
           x hybrida][GI:311658]; contains PF03171 2OG-Fe(II)
           oxygenase superfamily domain
          Length = 349

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -1

Query: 362 EAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTNMVTF 240
           + + + + DQ+ ++ + +   P H  V T+  K+R ++ TF
Sbjct: 260 DTILINVGDQMEIMSNGIYKSPVHR-VVTNTEKERISVATF 299


>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 302

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +3

Query: 51  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 224
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 304

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +3

Query: 51  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 224
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At3g47200.1 68416.m05125 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 476

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 446 PGAFRCYLDVA*HAPLLVLVSWSYEGCC 529
           P AFR YL      P+L+L S   E CC
Sbjct: 20  PSAFRNYLSSGSKEPVLLLESAGKESCC 47


>At2g36610.1 68415.m04488 homeobox-leucine zipper family protein
           similar to homeobox protein PpHB8 (GP:7415628)
           [Physcomitrella patens]; contains PfamPF00046: Homeobox
           domain
          Length = 185

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 504 CLGAMKGAVDGGLNVPHSIKRFPGYDAESIKFNAE 608
           CLG M GA    L+VP ++    GY  ES  FN +
Sbjct: 35  CLGTMMGAQQDILHVPLAMVE-SGYGEESNSFNGQ 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,963,642
Number of Sequences: 28952
Number of extensions: 280410
Number of successful extensions: 637
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)