BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1079 (643 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 64 2e-11 SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 49 7e-07 SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 25 7.0 SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb... 25 7.0 SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 25 9.3 >SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosaccharomyces pombe|chr 1|||Manual Length = 446 Score = 64.1 bits (149), Expect = 2e-11 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 1/87 (1%) Frame = +3 Query: 3 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKK 182 + +IP P N +GKA Y+ SEN I WKI R G E AE+ L T ++ Sbjct: 332 LNFRIPVPTNVVKANPRVNRGKAGYEPSENIINWKIPRFLGETELIFYAEVELSNTTNQQ 391 Query: 183 KWTRPPISMGFEV-PFAPSGFKVRY*R 260 W +PPIS+ F + F SG V+Y R Sbjct: 392 IWAKPPISLDFNILMFTSSGLHVQYLR 418 Score = 27.5 bits (58), Expect = 1.7 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +2 Query: 254 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 346 L+V EP + S + IKWVRY R+G E R Sbjct: 417 LRVSEP--SNSKYKSIKWVRYSTRAGTCEIR 445 >SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 426 Score = 48.8 bits (111), Expect = 7e-07 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 3/87 (3%) Frame = +3 Query: 3 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXL--LETDT 176 +++ IP P + + G +Y + A+VW IK+ AG KE + AE+ L ++ + Sbjct: 310 VQIIIPVPEDADSPRFQTSNGHVQYAPEQAAMVWNIKKFAGGKEFFMRAEMGLPSVKNED 369 Query: 177 KKKWTRPPISMGFEVP-FAPSGFKVRY 254 + + P+ + F +P F SG +VRY Sbjct: 370 IQVQKKRPVQLKFAIPYFTTSGIQVRY 396 Score = 32.3 bits (70), Expect = 0.061 Identities = 19/52 (36%), Positives = 25/52 (48%) Frame = +2 Query: 176 QEEVDAPAHLHGVRSSLCTLRIQGSLLKVFEPKLNYSDHDVIKWVRYIGRSG 331 Q + P L T IQ LK+ EPKLNY + WVRY+ ++G Sbjct: 371 QVQKKRPVQLKFAIPYFTTSGIQVRYLKITEPKLNY---HAMPWVRYVTQNG 419 >SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosaccharomyces pombe|chr 1|||Manual Length = 811 Score = 25.4 bits (53), Expect = 7.0 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -3 Query: 113 LDLPHDSVLRGFILRFPLQANQLHPAGVQRSWN 15 L+ P +LR L PLQ N + P GV +N Sbjct: 432 LETPEPGLLRS--LMTPLQGNMVAPTGVHSQFN 462 >SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pombe|chr 2|||Manual Length = 460 Score = 25.4 bits (53), Expect = 7.0 Identities = 18/48 (37%), Positives = 22/48 (45%) Frame = +1 Query: 214 SKFPLHPPDSRFATEGVRTEAELLGP*RHQVGALHRTLRTLRDQVLND 357 +KF L P D T R E++G G LH T R+ DQV D Sbjct: 76 NKFTLQPSDEDIHTANERRLGEIIG--TGIAGKLH-TGRSRNDQVTTD 120 >SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosaccharomyces pombe|chr 2|||Manual Length = 476 Score = 25.0 bits (52), Expect = 9.3 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +3 Query: 27 LNTSGVQLICLKGKAKYKASENA 95 LN V+ + L+GK Y + ENA Sbjct: 172 LNPKNVEALVLRGKVMYYSGENA 194 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,275,024 Number of Sequences: 5004 Number of extensions: 39589 Number of successful extensions: 109 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 109 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 287744314 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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