Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1079
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    64   2e-11
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    49   7e-07
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    25   7.0  
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...    25   7.0  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    25   9.3  

>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
 Frame = +3

Query: 3   IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKK 182
           +  +IP P N         +GKA Y+ SEN I WKI R  G  E    AE+ L  T  ++
Sbjct: 332 LNFRIPVPTNVVKANPRVNRGKAGYEPSENIINWKIPRFLGETELIFYAEVELSNTTNQQ 391

Query: 183 KWTRPPISMGFEV-PFAPSGFKVRY*R 260
            W +PPIS+ F +  F  SG  V+Y R
Sbjct: 392 IWAKPPISLDFNILMFTSSGLHVQYLR 418



 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 254 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 346
           L+V EP  + S +  IKWVRY  R+G  E R
Sbjct: 417 LRVSEP--SNSKYKSIKWVRYSTRAGTCEIR 445


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
 Frame = +3

Query: 3   IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXL--LETDT 176
           +++ IP P +    +     G  +Y   + A+VW IK+ AG KE  + AE+ L  ++ + 
Sbjct: 310 VQIIIPVPEDADSPRFQTSNGHVQYAPEQAAMVWNIKKFAGGKEFFMRAEMGLPSVKNED 369

Query: 177 KKKWTRPPISMGFEVP-FAPSGFKVRY 254
            +   + P+ + F +P F  SG +VRY
Sbjct: 370 IQVQKKRPVQLKFAIPYFTTSGIQVRY 396



 Score = 32.3 bits (70), Expect = 0.061
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 176 QEEVDAPAHLHGVRSSLCTLRIQGSLLKVFEPKLNYSDHDVIKWVRYIGRSG 331
           Q +   P  L        T  IQ   LK+ EPKLNY     + WVRY+ ++G
Sbjct: 371 QVQKKRPVQLKFAIPYFTTSGIQVRYLKITEPKLNY---HAMPWVRYVTQNG 419


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 113 LDLPHDSVLRGFILRFPLQANQLHPAGVQRSWN 15
           L+ P   +LR   L  PLQ N + P GV   +N
Sbjct: 432 LETPEPGLLRS--LMTPLQGNMVAPTGVHSQFN 462


>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +1

Query: 214 SKFPLHPPDSRFATEGVRTEAELLGP*RHQVGALHRTLRTLRDQVLND 357
           +KF L P D    T   R   E++G      G LH T R+  DQV  D
Sbjct: 76  NKFTLQPSDEDIHTANERRLGEIIG--TGIAGKLH-TGRSRNDQVTTD 120


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 27  LNTSGVQLICLKGKAKYKASENA 95
           LN   V+ + L+GK  Y + ENA
Sbjct: 172 LNPKNVEALVLRGKVMYYSGENA 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,024
Number of Sequences: 5004
Number of extensions: 39589
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)