Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1079
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 83 2e-16
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 54 1e-07
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 52 4e-07
05_06_0273 - 26851077-26851167,26851433-26851869,26852125-268522... 34 0.11
01_06_0888 + 32738275-32739567 30 1.8
02_05_0882 + 32477306-32478189,32478735-32478819,32478930-324789... 29 2.4
06_01_0917 - 7077934-7080339 28 5.5
05_05_0078 - 22229607-22229685,22229851-22229921,22229992-222300... 28 7.2
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 82.6 bits (195), Expect = 2e-16
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLET-DTK 179
+ VK+P P T+ GKAKY AS +++VWKI++ G E +SAE+ L+ T K
Sbjct: 325 VVVKVPVPKQTAKTSFQTTSGKAKYNASIDSLVWKIRKFPGQTEATMSAEVELISTMGEK 384
Query: 180 KKWTRPPISMGFEVP-FAPSGFKVRY 254
K W RPPI M F+VP F SG +VR+
Sbjct: 385 KSWNRPPIQMEFQVPMFTASGLRVRF 410
Score = 34.3 bits (75), Expect = 0.083
Identities = 16/32 (50%), Positives = 22/32 (68%)
Frame = +2
Query: 254 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 349
LKV+E S ++ ++WVRYI R+G YE RC
Sbjct: 411 LKVWEK----SGYNTVEWVRYITRAGSYEIRC 438
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXL--LETDT 176
+E+++P P +++ + G A Y +A+VWKIK G KE AE L + ++
Sbjct: 289 VEIEVPVPEDSTNPNIRTSMGSAAYAPERDAMVWKIKSFPGGKEYMCRAEFSLPSITSED 348
Query: 177 KKKWTRPPISMGFEVP-FAPSGFKVRY 254
+ PI + FE+P F SG +VRY
Sbjct: 349 GMPEKKAPIRVKFEIPYFTVSGIQVRY 375
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXL--LETDT 176
+E+++P P + + + G A Y +A+VWK+K G K+ AE L + +
Sbjct: 314 VEIEVPVPSDATNPNIRTSMGSAAYAPERDAMVWKVKSFPGGKDYMCRAEFSLPSITAEE 373
Query: 177 KKKWTRPPISMGFEVP-FAPSGFKVRY 254
+ PI + FE+P F SG +VRY
Sbjct: 374 AAPEKKAPIRVKFEIPYFTVSGIQVRY 400
>05_06_0273 - 26851077-26851167,26851433-26851869,26852125-26852271,
26852352-26854415,26854792-26854908,26855007-26855093,
26855350-26855439,26855523-26855609,26856736-26856810
Length = 1064
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 333 STRPGAERRGDDWLRESQRVRIFEKYNKKTN 425
S R AE++ ++W RE+Q R+F+KYN TN
Sbjct: 1035 SKRRFAEQQAEEWWRENQE-RVFKKYNHPTN 1064
>01_06_0888 + 32738275-32739567
Length = 430
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 98 DSVLRGFILRFPLQANQLHPAGVQRSWNLHFD 3
D+V+R R P N++H AGV R W H +
Sbjct: 12 DAVVREIANRLPCVYNRVHLAGVCRPWREHLE 43
>02_05_0882 +
32477306-32478189,32478735-32478819,32478930-32478992,
32479177-32479334,32479460-32479535,32479622-32479681,
32479978-32480082,32480450-32480629
Length = 536
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = -2
Query: 393 VLVAIHEANRRRVVQHLVS*SPERPM*RTHLMTSWSE*FSFGSNTFSS 250
V+ A E+ R + +HL+S SP R RT +TSW + GS +F S
Sbjct: 244 VVEATRESTSRDI-EHLISPSPHRRFRRT--ITSWLKGEHLGSGSFGS 288
>06_01_0917 - 7077934-7080339
Length = 801
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 128 HARHALDLPHDSVLRGFILRFPLQANQL 45
H LP D++LRG + RFP +A L
Sbjct: 223 HPEEVAGLPVDAILRGSVRRFPDEAGAL 250
>05_05_0078 -
22229607-22229685,22229851-22229921,22229992-22230058,
22230195-22230263,22230376-22230526,22230915-22230990,
22231466-22231569,22231676-22231772,22231845-22231931,
22232016-22232102,22232190-22232279,22232405-22232482,
22232595-22232759,22232898-22233048,22233610-22233887,
22234072-22234233,22234324-22234560,22234633-22234704,
22235187-22235273,22235498-22235557
Length = 755
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 66 KAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKKKWTRPP 200
KA Y+ S + I W +AG+ +L A++ +L +D ++ PP
Sbjct: 202 KAPYEDS-SGIFWDNDSLAGLLALELKADLLILLSDVDGLYSGPP 245
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,704,057
Number of Sequences: 37544
Number of extensions: 269713
Number of successful extensions: 761
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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