BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1079 (643 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 83 2e-16 05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 54 1e-07 01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 52 4e-07 05_06_0273 - 26851077-26851167,26851433-26851869,26852125-268522... 34 0.11 01_06_0888 + 32738275-32739567 30 1.8 02_05_0882 + 32477306-32478189,32478735-32478819,32478930-324789... 29 2.4 06_01_0917 - 7077934-7080339 28 5.5 05_05_0078 - 22229607-22229685,22229851-22229921,22229992-222300... 28 7.2 >02_05_0373 + 28374298-28374380,28375126-28375303,28375975-28376065, 28376162-28376256,28376379-28376468,28376789-28376837, 28376941-28377079,28377224-28377340,28377437-28377527, 28377604-28377746,28378009-28378123,28378439-28378483, 28378565-28378645 Length = 438 Score = 82.6 bits (195), Expect = 2e-16 Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 2/86 (2%) Frame = +3 Query: 3 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLET-DTK 179 + VK+P P T+ GKAKY AS +++VWKI++ G E +SAE+ L+ T K Sbjct: 325 VVVKVPVPKQTAKTSFQTTSGKAKYNASIDSLVWKIRKFPGQTEATMSAEVELISTMGEK 384 Query: 180 KKWTRPPISMGFEVP-FAPSGFKVRY 254 K W RPPI M F+VP F SG +VR+ Sbjct: 385 KSWNRPPIQMEFQVPMFTASGLRVRF 410 Score = 34.3 bits (75), Expect = 0.083 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = +2 Query: 254 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 349 LKV+E S ++ ++WVRYI R+G YE RC Sbjct: 411 LKVWEK----SGYNTVEWVRYITRAGSYEIRC 438 >05_06_0262 - 26746180-26746278,26746371-26746493,26746584-26746725, 26746824-26746921,26747012-26747108,26747215-26747322, 26747900-26748003,26748170-26748268,26748373-26748435, 26748538-26748687,26748769-26748900 Length = 404 Score = 53.6 bits (123), Expect = 1e-07 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%) Frame = +3 Query: 3 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXL--LETDT 176 +E+++P P +++ + G A Y +A+VWKIK G KE AE L + ++ Sbjct: 289 VEIEVPVPEDSTNPNIRTSMGSAAYAPERDAMVWKIKSFPGGKEYMCRAEFSLPSITSED 348 Query: 177 KKKWTRPPISMGFEVP-FAPSGFKVRY 254 + PI + FE+P F SG +VRY Sbjct: 349 GMPEKKAPIRVKFEIPYFTVSGIQVRY 375 >01_06_0412 + 29159918-29160046,29160148-29160297,29160385-29160447, 29160540-29160716,29160796-29160899,29162142-29162249, 29162336-29162432,29162540-29162637,29162718-29162859, 29162941-29163063,29163161-29163259 Length = 429 Score = 52.0 bits (119), Expect = 4e-07 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 3/87 (3%) Frame = +3 Query: 3 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXL--LETDT 176 +E+++P P + + + G A Y +A+VWK+K G K+ AE L + + Sbjct: 314 VEIEVPVPSDATNPNIRTSMGSAAYAPERDAMVWKVKSFPGGKDYMCRAEFSLPSITAEE 373 Query: 177 KKKWTRPPISMGFEVP-FAPSGFKVRY 254 + PI + FE+P F SG +VRY Sbjct: 374 AAPEKKAPIRVKFEIPYFTVSGIQVRY 400 >05_06_0273 - 26851077-26851167,26851433-26851869,26852125-26852271, 26852352-26854415,26854792-26854908,26855007-26855093, 26855350-26855439,26855523-26855609,26856736-26856810 Length = 1064 Score = 33.9 bits (74), Expect = 0.11 Identities = 15/31 (48%), Positives = 22/31 (70%) Frame = +3 Query: 333 STRPGAERRGDDWLRESQRVRIFEKYNKKTN 425 S R AE++ ++W RE+Q R+F+KYN TN Sbjct: 1035 SKRRFAEQQAEEWWRENQE-RVFKKYNHPTN 1064 >01_06_0888 + 32738275-32739567 Length = 430 Score = 29.9 bits (64), Expect = 1.8 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -3 Query: 98 DSVLRGFILRFPLQANQLHPAGVQRSWNLHFD 3 D+V+R R P N++H AGV R W H + Sbjct: 12 DAVVREIANRLPCVYNRVHLAGVCRPWREHLE 43 >02_05_0882 + 32477306-32478189,32478735-32478819,32478930-32478992, 32479177-32479334,32479460-32479535,32479622-32479681, 32479978-32480082,32480450-32480629 Length = 536 Score = 29.5 bits (63), Expect = 2.4 Identities = 19/48 (39%), Positives = 27/48 (56%) Frame = -2 Query: 393 VLVAIHEANRRRVVQHLVS*SPERPM*RTHLMTSWSE*FSFGSNTFSS 250 V+ A E+ R + +HL+S SP R RT +TSW + GS +F S Sbjct: 244 VVEATRESTSRDI-EHLISPSPHRRFRRT--ITSWLKGEHLGSGSFGS 288 >06_01_0917 - 7077934-7080339 Length = 801 Score = 28.3 bits (60), Expect = 5.5 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -3 Query: 128 HARHALDLPHDSVLRGFILRFPLQANQL 45 H LP D++LRG + RFP +A L Sbjct: 223 HPEEVAGLPVDAILRGSVRRFPDEAGAL 250 >05_05_0078 - 22229607-22229685,22229851-22229921,22229992-22230058, 22230195-22230263,22230376-22230526,22230915-22230990, 22231466-22231569,22231676-22231772,22231845-22231931, 22232016-22232102,22232190-22232279,22232405-22232482, 22232595-22232759,22232898-22233048,22233610-22233887, 22234072-22234233,22234324-22234560,22234633-22234704, 22235187-22235273,22235498-22235557 Length = 755 Score = 27.9 bits (59), Expect = 7.2 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = +3 Query: 66 KAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKKKWTRPP 200 KA Y+ S + I W +AG+ +L A++ +L +D ++ PP Sbjct: 202 KAPYEDS-SGIFWDNDSLAGLLALELKADLLILLSDVDGLYSGPP 245 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,704,057 Number of Sequences: 37544 Number of extensions: 269713 Number of successful extensions: 761 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 741 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 760 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1584867848 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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