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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1079
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760...    83   2e-16
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467...    54   1e-07
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604...    52   4e-07
05_06_0273 - 26851077-26851167,26851433-26851869,26852125-268522...    34   0.11 
01_06_0888 + 32738275-32739567                                         30   1.8  
02_05_0882 + 32477306-32478189,32478735-32478819,32478930-324789...    29   2.4  
06_01_0917 - 7077934-7080339                                           28   5.5  
05_05_0078 - 22229607-22229685,22229851-22229921,22229992-222300...    28   7.2  

>02_05_0373 +
           28374298-28374380,28375126-28375303,28375975-28376065,
           28376162-28376256,28376379-28376468,28376789-28376837,
           28376941-28377079,28377224-28377340,28377437-28377527,
           28377604-28377746,28378009-28378123,28378439-28378483,
           28378565-28378645
          Length = 438

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
 Frame = +3

Query: 3   IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLET-DTK 179
           + VK+P P  T+        GKAKY AS +++VWKI++  G  E  +SAE+ L+ T   K
Sbjct: 325 VVVKVPVPKQTAKTSFQTTSGKAKYNASIDSLVWKIRKFPGQTEATMSAEVELISTMGEK 384

Query: 180 KKWTRPPISMGFEVP-FAPSGFKVRY 254
           K W RPPI M F+VP F  SG +VR+
Sbjct: 385 KSWNRPPIQMEFQVPMFTASGLRVRF 410



 Score = 34.3 bits (75), Expect = 0.083
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +2

Query: 254 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 349
           LKV+E     S ++ ++WVRYI R+G YE RC
Sbjct: 411 LKVWEK----SGYNTVEWVRYITRAGSYEIRC 438


>05_06_0262 -
           26746180-26746278,26746371-26746493,26746584-26746725,
           26746824-26746921,26747012-26747108,26747215-26747322,
           26747900-26748003,26748170-26748268,26748373-26748435,
           26748538-26748687,26748769-26748900
          Length = 404

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
 Frame = +3

Query: 3   IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXL--LETDT 176
           +E+++P P +++   +    G A Y    +A+VWKIK   G KE    AE  L  + ++ 
Sbjct: 289 VEIEVPVPEDSTNPNIRTSMGSAAYAPERDAMVWKIKSFPGGKEYMCRAEFSLPSITSED 348

Query: 177 KKKWTRPPISMGFEVP-FAPSGFKVRY 254
                + PI + FE+P F  SG +VRY
Sbjct: 349 GMPEKKAPIRVKFEIPYFTVSGIQVRY 375


>01_06_0412 +
           29159918-29160046,29160148-29160297,29160385-29160447,
           29160540-29160716,29160796-29160899,29162142-29162249,
           29162336-29162432,29162540-29162637,29162718-29162859,
           29162941-29163063,29163161-29163259
          Length = 429

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
 Frame = +3

Query: 3   IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXL--LETDT 176
           +E+++P P + +   +    G A Y    +A+VWK+K   G K+    AE  L  +  + 
Sbjct: 314 VEIEVPVPSDATNPNIRTSMGSAAYAPERDAMVWKVKSFPGGKDYMCRAEFSLPSITAEE 373

Query: 177 KKKWTRPPISMGFEVP-FAPSGFKVRY 254
                + PI + FE+P F  SG +VRY
Sbjct: 374 AAPEKKAPIRVKFEIPYFTVSGIQVRY 400


>05_06_0273 - 26851077-26851167,26851433-26851869,26852125-26852271,
            26852352-26854415,26854792-26854908,26855007-26855093,
            26855350-26855439,26855523-26855609,26856736-26856810
          Length = 1064

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +3

Query: 333  STRPGAERRGDDWLRESQRVRIFEKYNKKTN 425
            S R  AE++ ++W RE+Q  R+F+KYN  TN
Sbjct: 1035 SKRRFAEQQAEEWWRENQE-RVFKKYNHPTN 1064


>01_06_0888 + 32738275-32739567
          Length = 430

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 98  DSVLRGFILRFPLQANQLHPAGVQRSWNLHFD 3
           D+V+R    R P   N++H AGV R W  H +
Sbjct: 12  DAVVREIANRLPCVYNRVHLAGVCRPWREHLE 43


>02_05_0882 +
           32477306-32478189,32478735-32478819,32478930-32478992,
           32479177-32479334,32479460-32479535,32479622-32479681,
           32479978-32480082,32480450-32480629
          Length = 536

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = -2

Query: 393 VLVAIHEANRRRVVQHLVS*SPERPM*RTHLMTSWSE*FSFGSNTFSS 250
           V+ A  E+  R + +HL+S SP R   RT  +TSW +    GS +F S
Sbjct: 244 VVEATRESTSRDI-EHLISPSPHRRFRRT--ITSWLKGEHLGSGSFGS 288


>06_01_0917 - 7077934-7080339
          Length = 801

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 128 HARHALDLPHDSVLRGFILRFPLQANQL 45
           H      LP D++LRG + RFP +A  L
Sbjct: 223 HPEEVAGLPVDAILRGSVRRFPDEAGAL 250


>05_05_0078 -
           22229607-22229685,22229851-22229921,22229992-22230058,
           22230195-22230263,22230376-22230526,22230915-22230990,
           22231466-22231569,22231676-22231772,22231845-22231931,
           22232016-22232102,22232190-22232279,22232405-22232482,
           22232595-22232759,22232898-22233048,22233610-22233887,
           22234072-22234233,22234324-22234560,22234633-22234704,
           22235187-22235273,22235498-22235557
          Length = 755

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 66  KAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKKKWTRPP 200
           KA Y+ S + I W    +AG+   +L A++ +L +D    ++ PP
Sbjct: 202 KAPYEDS-SGIFWDNDSLAGLLALELKADLLILLSDVDGLYSGPP 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,704,057
Number of Sequences: 37544
Number of extensions: 269713
Number of successful extensions: 761
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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