Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1079
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)     71   6e-13
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10)                   29   2.4  
SB_43303| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_39538| Best HMM Match : VWA (HMM E-Value=0)                         27   9.8  
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)                    27   9.8  
SB_12361| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)               27   9.8  

>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
          Length = 331

 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 30/32 (93%), Positives = 30/32 (93%)
 Frame = +2

Query: 254 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 349
           LKVFEPKLNYSDHD IKWVRYI RSGLYETRC
Sbjct: 300 LKVFEPKLNYSDHDTIKWVRYISRSGLYETRC 331


>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +3

Query: 69  AKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKKKWTRPPISMGFEVP-FAPSGFK 245
           A+YK +E  ++W++K + G  E  ++ ++ L +     +    P+S+ FE+P +  SG +
Sbjct: 234 AEYKTAEKLLLWQVKSIRGGAEVAINIKLKLKDKAKSARKELGPVSLDFEIPMYICSGLQ 293

Query: 246 VR 251
           +R
Sbjct: 294 IR 295


>SB_45534| Best HMM Match : 7tm_1 (HMM E-Value=1e-10)
          Length = 548

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +1

Query: 277 ELLGP*RHQVGALHRTLRTLRDQVLNDAATIGFVNRNEYEYSKNTTKKQTIQIQFNVIAM 456
           ++  P RH++   HRT R  RD+  +     G++ +N+    + + K QT  + F  +  
Sbjct: 20  KISSPYRHKMAPYHRTERVSRDENTDYRLPAGYIAKNK----RISKKLQTWLLTFTFVNT 75

Query: 457 LYIILRFI 480
            Y  L+ +
Sbjct: 76  NYCYLKLL 83


>SB_43303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +2

Query: 113 AHGGHEGDPAVCGDXAARDRHQEEVDAPAHLHGVRSSLCTLRIQGSLLKVFEPKLNYSDH 292
           A+GGHE DPA     AA+  +   +  P  +      L  L    +  K  EPK  +S H
Sbjct: 19  ANGGHEADPA---KKAAKTANTASISKPEGVSDTAKDL--LDFNNNESKAEEPKEQHSIH 73

Query: 293 D 295
           +
Sbjct: 74  E 74


>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3208

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 196  RPSPWGSKFPLHPPDSRFATE 258
            RP   G    +HPPDSR  TE
Sbjct: 2853 RPMQEGGYHTIHPPDSRLVTE 2873


>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
          Length = 1705

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 164 RDRHQEEVDAPAHLHGVRSSLCTLRIQGSLLKVFEPK 274
           R  H EEV  PAH  GV+  + T  +      V EPK
Sbjct: 423 RKEHHEEVTHPAHKEGVKLEVETAPMTDHESVVGEPK 459


>SB_12361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 312 RTHLMTSWSE*FSFGSNTFSSEP*IRRVQRELRTPWRWAGASTSSWCRS 166
           RTH   +W+   S  + TF S   + R Q   +  W W+  +    CRS
Sbjct: 44  RTHKYAAWTV-LSLPTGTFCSVVLVTRGQLAKQLGWNWSRMALRVRCRS 91


>SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)
          Length = 505

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 24/90 (26%), Positives = 34/90 (37%)
 Frame = +1

Query: 193 ARPSPWGSKFPLHPPDSRFATEGVRTEAELLGP*RHQVGALHRTLRTLRDQVLNDAATIG 372
           ARP+P G   PLH P    A +     A+   P   Q  A    L +  +Q  +    I 
Sbjct: 46  ARPAPGGPVSPLHSPKPHMANKSKMPVAQ---PPPAQAQAF-EFLPSATNQPSHHQQHIE 101

Query: 373 FVNRNEYEYSKNTTKKQTIQIQFNVIAMLY 462
            ++   Y YS+    +   Q  F  I   Y
Sbjct: 102 SIDGTTYFYSQQNQNQAVAQRTFGYITTCY 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,884,702
Number of Sequences: 59808
Number of extensions: 304143
Number of successful extensions: 804
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)