Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1079
         (643 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070712-1|AAL48183.1|  437|Drosophila melanogaster SD05403p pro...   173   1e-43
AJ005962-1|CAA06785.1|  437|Drosophila melanogaster clathrin-ass...   173   1e-43
AF110232-1|AAF14248.1|  437|Drosophila melanogaster clathrin-ass...   173   1e-43
AE014297-3160|AAF56002.3|  437|Drosophila melanogaster CG7057-PB...   173   1e-43
AE014297-3159|AAF56001.1|  437|Drosophila melanogaster CG7057-PA...   173   1e-43
BT001492-1|AAN71247.1|  225|Drosophila melanogaster LD27989p pro...    58   1e-08
AY058621-1|AAL13850.1|  426|Drosophila melanogaster LD31377p pro...    58   1e-08
AJ006219-1|CAA06918.1|  426|Drosophila melanogaster clathrin-ass...    58   1e-08
AF110231-1|AAF14247.1|  426|Drosophila melanogaster clathrin-ass...    58   1e-08
AE014297-967|AAF54399.1|  426|Drosophila melanogaster CG9388-PA ...    58   1e-08

>AY070712-1|AAL48183.1|  437|Drosophila melanogaster SD05403p
           protein.
          Length = 437

 Score =  173 bits (422), Expect = 1e-43
 Identities = 82/84 (97%), Positives = 82/84 (97%)
 Frame = +3

Query: 3   IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKK 182
           IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEI LLETDTKK
Sbjct: 322 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKK 381

Query: 183 KWTRPPISMGFEVPFAPSGFKVRY 254
           KWTRPPISM FEVPFAPSGFKVRY
Sbjct: 382 KWTRPPISMNFEVPFAPSGFKVRY 405



 Score = 74.9 bits (176), Expect = 8e-14
 Identities = 31/32 (96%), Positives = 32/32 (100%)
 Frame = +2

Query: 254 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 349
           LKVFEPKLNYSDHDV+KWVRYIGRSGLYETRC
Sbjct: 406 LKVFEPKLNYSDHDVVKWVRYIGRSGLYETRC 437


>AJ005962-1|CAA06785.1|  437|Drosophila melanogaster
           clathrin-associated protein protein.
          Length = 437

 Score =  173 bits (422), Expect = 1e-43
 Identities = 82/84 (97%), Positives = 82/84 (97%)
 Frame = +3

Query: 3   IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKK 182
           IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEI LLETDTKK
Sbjct: 322 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKK 381

Query: 183 KWTRPPISMGFEVPFAPSGFKVRY 254
           KWTRPPISM FEVPFAPSGFKVRY
Sbjct: 382 KWTRPPISMNFEVPFAPSGFKVRY 405



 Score = 74.9 bits (176), Expect = 8e-14
 Identities = 31/32 (96%), Positives = 32/32 (100%)
 Frame = +2

Query: 254 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 349
           LKVFEPKLNYSDHDV+KWVRYIGRSGLYETRC
Sbjct: 406 LKVFEPKLNYSDHDVVKWVRYIGRSGLYETRC 437


>AF110232-1|AAF14248.1|  437|Drosophila melanogaster
           clathrin-associated adaptor complexAP-2 medium chain
           protein.
          Length = 437

 Score =  173 bits (422), Expect = 1e-43
 Identities = 82/84 (97%), Positives = 82/84 (97%)
 Frame = +3

Query: 3   IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKK 182
           IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEI LLETDTKK
Sbjct: 322 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKK 381

Query: 183 KWTRPPISMGFEVPFAPSGFKVRY 254
           KWTRPPISM FEVPFAPSGFKVRY
Sbjct: 382 KWTRPPISMNFEVPFAPSGFKVRY 405



 Score = 74.9 bits (176), Expect = 8e-14
 Identities = 31/32 (96%), Positives = 32/32 (100%)
 Frame = +2

Query: 254 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 349
           LKVFEPKLNYSDHDV+KWVRYIGRSGLYETRC
Sbjct: 406 LKVFEPKLNYSDHDVVKWVRYIGRSGLYETRC 437


>AE014297-3160|AAF56002.3|  437|Drosophila melanogaster CG7057-PB,
           isoform B protein.
          Length = 437

 Score =  173 bits (422), Expect = 1e-43
 Identities = 82/84 (97%), Positives = 82/84 (97%)
 Frame = +3

Query: 3   IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKK 182
           IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEI LLETDTKK
Sbjct: 322 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKK 381

Query: 183 KWTRPPISMGFEVPFAPSGFKVRY 254
           KWTRPPISM FEVPFAPSGFKVRY
Sbjct: 382 KWTRPPISMNFEVPFAPSGFKVRY 405



 Score = 74.9 bits (176), Expect = 8e-14
 Identities = 31/32 (96%), Positives = 32/32 (100%)
 Frame = +2

Query: 254 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 349
           LKVFEPKLNYSDHDV+KWVRYIGRSGLYETRC
Sbjct: 406 LKVFEPKLNYSDHDVVKWVRYIGRSGLYETRC 437


>AE014297-3159|AAF56001.1|  437|Drosophila melanogaster CG7057-PA,
           isoform A protein.
          Length = 437

 Score =  173 bits (422), Expect = 1e-43
 Identities = 82/84 (97%), Positives = 82/84 (97%)
 Frame = +3

Query: 3   IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKK 182
           IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEI LLETDTKK
Sbjct: 322 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKK 381

Query: 183 KWTRPPISMGFEVPFAPSGFKVRY 254
           KWTRPPISM FEVPFAPSGFKVRY
Sbjct: 382 KWTRPPISMNFEVPFAPSGFKVRY 405



 Score = 74.9 bits (176), Expect = 8e-14
 Identities = 31/32 (96%), Positives = 32/32 (100%)
 Frame = +2

Query: 254 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 349
           LKVFEPKLNYSDHDV+KWVRYIGRSGLYETRC
Sbjct: 406 LKVFEPKLNYSDHDVVKWVRYIGRSGLYETRC 437


>BT001492-1|AAN71247.1|  225|Drosophila melanogaster LD27989p
           protein.
          Length = 225

 Score = 58.0 bits (134), Expect = 1e-08
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
 Frame = +3

Query: 3   IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKK 182
           +E+ IP P +    +     G  KY   +NAI+W IK   G KE  + A   L   +++ 
Sbjct: 111 VEIVIPVPADADSPKFKTTIGSCKYAPEQNAIIWTIKSFPGGKEYLMRAHFGLPSVESED 170

Query: 183 KWT-RPPISMGFEVP-FAPSGFKVRY 254
               +PPI + FE+P F  SG +VRY
Sbjct: 171 NTEGKPPIQVRFEIPYFTTSGIQVRY 196


>AY058621-1|AAL13850.1|  426|Drosophila melanogaster LD31377p
           protein.
          Length = 426

 Score = 58.0 bits (134), Expect = 1e-08
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
 Frame = +3

Query: 3   IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKK 182
           +E+ IP P +    +     G  KY   +NAI+W IK   G KE  + A   L   +++ 
Sbjct: 312 VEIVIPVPADADSPKFKTTIGSCKYAPEQNAIIWTIKSFPGGKEYLMRAHFGLPSVESED 371

Query: 183 KWT-RPPISMGFEVP-FAPSGFKVRY 254
               +PPI + FE+P F  SG +VRY
Sbjct: 372 NTEGKPPIQVRFEIPYFTTSGIQVRY 397


>AJ006219-1|CAA06918.1|  426|Drosophila melanogaster
           clathrin-associated protein protein.
          Length = 426

 Score = 58.0 bits (134), Expect = 1e-08
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
 Frame = +3

Query: 3   IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKK 182
           +E+ IP P +    +     G  KY   +NAI+W IK   G KE  + A   L   +++ 
Sbjct: 312 VEIVIPVPADADSPKFKTTIGSCKYAPEQNAIIWTIKSFPGGKEYLMRAHFGLPSVESED 371

Query: 183 KWT-RPPISMGFEVP-FAPSGFKVRY 254
               +PPI + FE+P F  SG +VRY
Sbjct: 372 NTEGKPPIQVRFEIPYFTTSGIQVRY 397


>AF110231-1|AAF14247.1|  426|Drosophila melanogaster
           clathrin-associated adaptor complexAP-1 medium chain
           protein.
          Length = 426

 Score = 58.0 bits (134), Expect = 1e-08
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
 Frame = +3

Query: 3   IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKK 182
           +E+ IP P +    +     G  KY   +NAI+W IK   G KE  + A   L   +++ 
Sbjct: 312 VEIVIPVPADADSPKFKTTIGSCKYAPEQNAIIWTIKSFPGGKEYLMRAHFGLPSVESED 371

Query: 183 KWT-RPPISMGFEVP-FAPSGFKVRY 254
               +PPI + FE+P F  SG +VRY
Sbjct: 372 NTEGKPPIQVRFEIPYFTTSGIQVRY 397


>AE014297-967|AAF54399.1|  426|Drosophila melanogaster CG9388-PA
           protein.
          Length = 426

 Score = 58.0 bits (134), Expect = 1e-08
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
 Frame = +3

Query: 3   IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKK 182
           +E+ IP P +    +     G  KY   +NAI+W IK   G KE  + A   L   +++ 
Sbjct: 312 VEIVIPVPADADSPKFKTTIGSCKYAPEQNAIIWTIKSFPGGKEYLMRAHFGLPSVESED 371

Query: 183 KWT-RPPISMGFEVP-FAPSGFKVRY 254
               +PPI + FE+P F  SG +VRY
Sbjct: 372 NTEGKPPIQVRFEIPYFTTSGIQVRY 397


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,361,110
Number of Sequences: 53049
Number of extensions: 444995
Number of successful extensions: 1297
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2703623850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)