Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1079
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 147 7e-36
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 147 7e-36
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 147 7e-36
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 60 1e-09
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 60 1e-09
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 57 1e-08
U46669-6|AAM51526.1| 514|Caenorhabditis elegans Hypothetical pr... 33 0.13
U46669-5|AAA85746.3| 493|Caenorhabditis elegans Hypothetical pr... 33 0.13
U46669-4|AAQ65208.1| 557|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z83115-5|CAJ85757.1| 58|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr... 28 6.5
AC006832-8|AAF40000.1| 465|Caenorhabditis elegans Hypothetical ... 28 6.5
AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical ... 27 8.6
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 147 bits (356), Expect = 7e-36
Identities = 69/86 (80%), Positives = 75/86 (87%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDT-- 176
+EV+IPTP NTSGVQLIC+KGKAKYKA ENAIVWKIKRMAGMKE+Q+SAEI LL T
Sbjct: 324 LEVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKRMAGMKESQISAEIDLLSTGNVE 383
Query: 177 KKKWTRPPISMGFEVPFAPSGFKVRY 254
KKKW RPP+SM FEVPFAPSG KVRY
Sbjct: 384 KKKWNRPPVSMNFEVPFAPSGLKVRY 409
Score = 75.4 bits (177), Expect = 3e-14
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +2
Query: 254 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 349
LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC
Sbjct: 410 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 441
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 147 bits (356), Expect = 7e-36
Identities = 69/86 (80%), Positives = 75/86 (87%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDT-- 176
+EV+IPTP NTSGVQLIC+KGKAKYKA ENAIVWKIKRMAGMKE+Q+SAEI LL T
Sbjct: 318 LEVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKRMAGMKESQISAEIDLLSTGNVE 377
Query: 177 KKKWTRPPISMGFEVPFAPSGFKVRY 254
KKKW RPP+SM FEVPFAPSG KVRY
Sbjct: 378 KKKWNRPPVSMNFEVPFAPSGLKVRY 403
Score = 75.4 bits (177), Expect = 3e-14
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +2
Query: 254 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 349
LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC
Sbjct: 404 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 435
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 147 bits (356), Expect = 7e-36
Identities = 69/86 (80%), Positives = 75/86 (87%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDT-- 176
+EV+IPTP NTSGVQLIC+KGKAKYKA ENAIVWKIKRMAGMKE+Q+SAEI LL T
Sbjct: 324 LEVRIPTPPNTSGVQLICMKGKAKYKAGENAIVWKIKRMAGMKESQISAEIDLLSTGNVE 383
Query: 177 KKKWTRPPISMGFEVPFAPSGFKVRY 254
KKKW RPP+SM FEVPFAPSG KVRY
Sbjct: 384 KKKWNRPPVSMNFEVPFAPSGLKVRY 409
Score = 75.4 bits (177), Expect = 3e-14
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +2
Query: 254 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 349
LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC
Sbjct: 410 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 441
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKK 182
+E+ IP P + + G KY ++A VW IK G KE L+A + L +++
Sbjct: 309 VEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTIKNFPGGKEYLLTAHLSLPSVMSEE 368
Query: 183 KWTRPPISMGFEVP-FAPSGFKVRY 254
RPPI + FE+P F SG +VRY
Sbjct: 369 SEGRPPIKVKFEIPYFTTSGIQVRY 393
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 230 TLRIQGSLLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 346
T IQ LK+ E S + + WVRYI ++G YE R
Sbjct: 386 TSGIQVRYLKIIEK----SGYQALPWVRYITQNGEYEMR 420
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKK 182
+E+ IP P + + G KY ++A VW IK G KE L+A + L +++
Sbjct: 309 VEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTIKNFPGGKEYLLTAHLSLPSVMSEE 368
Query: 183 KWTRPPISMGFEVP-FAPSGFKVRY 254
RPPI + FE+P F SG +VRY
Sbjct: 369 SEGRPPIKVKFEIPYFTTSGIQVRY 393
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 230 TLRIQGSLLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 346
T IQ LK+ E + + + WVRYI ++G YE R
Sbjct: 386 TSGIQVRYLKIIEKR----GYQALPWVRYITQNGEYEMR 420
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKK 182
+EV IP P + S + G AKY NAIVW I+ G +E + + L +++
Sbjct: 313 VEVIIPVPSDVSAPKFKTGAGTAKYVPELNAIVWSIRSFPGGREYIMRSSFMLPSIGSEE 372
Query: 183 KWTRPPISMGFEVP-FAPSGFKVRY 254
RPPI++ FE+P + SG +VRY
Sbjct: 373 LEGRPPINVKFEIPYYTTSGLQVRY 397
>U46669-6|AAM51526.1| 514|Caenorhabditis elegans Hypothetical
protein C41G11.4b protein.
Length = 514
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 462 IQHSYYIKLYLYGLFFCCIFRIFVLVAIHEANRRRVVQHLV 340
+ SY ++L++YG+ FC F+ + A R QHLV
Sbjct: 14 LSFSYTLELWMYGIAFCVGLPAFIFTVVRLARSRSSRQHLV 54
>U46669-5|AAA85746.3| 493|Caenorhabditis elegans Hypothetical
protein C41G11.4a protein.
Length = 493
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 462 IQHSYYIKLYLYGLFFCCIFRIFVLVAIHEANRRRVVQHLV 340
+ SY ++L++YG+ FC F+ + A R QHLV
Sbjct: 14 LSFSYTLELWMYGIAFCVGLPAFIFTVVRLARSRSSRQHLV 54
>U46669-4|AAQ65208.1| 557|Caenorhabditis elegans Hypothetical
protein C41G11.4c protein.
Length = 557
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 462 IQHSYYIKLYLYGLFFCCIFRIFVLVAIHEANRRRVVQHLV 340
+ SY ++L++YG+ FC F+ + A R QHLV
Sbjct: 14 LSFSYTLELWMYGIAFCVGLPAFIFTVVRLARSRSSRQHLV 54
>Z83115-5|CAJ85757.1| 58|Caenorhabditis elegans Hypothetical
protein K11D2.3b protein.
Length = 58
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 192 RPPISMGFEVP-FAPSGFKVRY 254
RPPI + FE+P F SG +VRY
Sbjct: 8 RPPIKVKFEIPYFTTSGIQVRY 29
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 230 TLRIQGSLLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 346
T IQ LK+ E S + + WVRYI ++G YE R
Sbjct: 22 TSGIQVRYLKIIEK----SGYQALPWVRYITQNGEYEMR 56
>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical protein
C27H6.1 protein.
Length = 1657
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Frame = +3
Query: 54 CLKGKAKYKASENAIVWKIKRM-----AGMKETQLSAEIXLLETDTKKKWTRPPISMGFE 218
C G+AKY+ ++VW+I R+ A K L L D + P + F
Sbjct: 1469 CAIGEAKYEHVYRSLVWRIPRLPEKHHAAYKSHLLKCRFELSSFDLMPEEFLPRCDVDFT 1528
Query: 219 VPFA 230
+P A
Sbjct: 1529 MPLA 1532
>AC006832-8|AAF40000.1| 465|Caenorhabditis elegans Hypothetical
protein ZK355.6 protein.
Length = 465
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 27 LNTSGVQLICL--KGKAKYKASENAIVWKIKRM 119
LN S ++ CL GK +A + VWK+K+M
Sbjct: 335 LNMSSLEPFCLFIYGKVVLEAGDEEFVWKLKKM 367
>AC006816-6|ABA00154.1| 506|Caenorhabditis elegans Hypothetical
protein Y71D11A.1 protein.
Length = 506
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +3
Query: 330 DSTRPGAERRGDDWLRESQRVRIFEKYNKKTNHTNTI*CNSYAVYNFTFHFD 485
D + PG+ L S + ++ K+ N T+ CN YA FT H D
Sbjct: 85 DRSDPGSSATWLVRLSASLSLPVYPSTLKEANLFVTVICNGYAYPLFTLHID 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,532,836
Number of Sequences: 27780
Number of extensions: 225676
Number of successful extensions: 739
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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