Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1079
(643 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46630.2 68418.m05740 clathrin adaptor complexes medium subun... 83 2e-16
At5g46630.1 68418.m05741 clathrin adaptor complexes medium subun... 83 2e-16
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 57 9e-09
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun... 51 8e-07
At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-lik... 30 1.5
At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-lik... 30 1.5
At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-lik... 30 1.5
At4g30110.1 68417.m04281 ATPase E1-E2 type family protein / halo... 28 4.6
At3g55610.1 68416.m06177 delta 1-pyrroline-5-carboxylate synthet... 28 4.6
>At5g46630.2 68418.m05740 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 441
Score = 82.6 bits (195), Expect = 2e-16
Identities = 41/86 (47%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLET-DTK 179
+ VKIP P T+ G+AKY S + +VWKI++ G E+ LSAEI L+ T K
Sbjct: 325 VVVKIPVPKQTAKTNFQVTTGRAKYNPSIDCLVWKIRKFPGQTESTLSAEIELISTMGEK 384
Query: 180 KKWTRPPISMGFEVP-FAPSGFKVRY 254
K WTRPPI M F+VP F SG +VR+
Sbjct: 385 KSWTRPPIQMEFQVPMFTASGLRVRF 410
>At5g46630.1 68418.m05741 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 438
Score = 82.6 bits (195), Expect = 2e-16
Identities = 41/86 (47%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXLLET-DTK 179
+ VKIP P T+ G+AKY S + +VWKI++ G E+ LSAEI L+ T K
Sbjct: 325 VVVKIPVPKQTAKTNFQVTTGRAKYNPSIDCLVWKIRKFPGQTESTLSAEIELISTMGEK 384
Query: 180 KKWTRPPISMGFEVP-FAPSGFKVRY 254
K WTRPPI M F+VP F SG +VR+
Sbjct: 385 KSWTRPPIQMEFQVPMFTASGLRVRF 410
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 254 LKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 349
LKV+E S ++ ++WVRYI ++G YE RC
Sbjct: 411 LKVWEK----SGYNTVEWVRYITKAGSYEIRC 438
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 57.2 bits (132), Expect = 9e-09
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXL--LETDT 176
+E+++P P + S + G A Y ++A+VWKIK G KE L AE L + +
Sbjct: 313 VEIELPVPTDASNPTVRTSLGSASYAPEKDALVWKIKSFPGNKEYMLRAEFHLPSITAEE 372
Query: 177 KKKWTRPPISMGFEVP-FAPSGFKVRY 254
+ PI + FE+P F SG +VRY
Sbjct: 373 ATPERKAPIRVKFEIPYFTVSGIQVRY 399
>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 50.8 bits (116), Expect = 8e-07
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 IEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIXL--LETDT 176
+E+++P P + + G A Y ++A+VWKI+ G KE L A+ L + +
Sbjct: 313 VEIELPVPTDAYNPDVRTSLGSAAYAPEKDALVWKIQYFYGNKEHTLKADFHLPSIAAEE 372
Query: 177 KKKWTRPPISMGFEVP-FAPSGFKVRY 254
+ PI + FE+P F SG +VRY
Sbjct: 373 ATPERKAPIRVKFEIPKFIVSGIQVRY 399
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +2
Query: 239 IQGSLLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 346
IQ LK+ E K Y H WVRYI +G YE R
Sbjct: 395 IQVRYLKIIE-KSGYQAHP---WVRYITMAGEYELR 426
>At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1240
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +3
Query: 12 KIPTPLNTSGVQLICLKGKAKYKASE--NAIVWKIKRMAGMKETQLSAEIXLLETDTKKK 185
K+ P N Q+ C+ + + E + I W++K +AG L L +K +
Sbjct: 424 KVEYPSNDEAFQIFCMNAFGQKQPHEGFDEIAWEVKALAGKLPLGLKVLGSALRGKSKPE 483
Query: 186 WTR 194
W R
Sbjct: 484 WER 486
>At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +3
Query: 12 KIPTPLNTSGVQLICLKGKAKYKASE--NAIVWKIKRMAGMKETQLSAEIXLLETDTKKK 185
K+ P N Q+ C+ + + E + I W++K +AG L L +K +
Sbjct: 424 KVEYPSNDEAFQIFCMNAFGQKQPHEGFDEIAWEVKALAGKLPLGLKVLGSALRGKSKPE 483
Query: 186 WTR 194
W R
Sbjct: 484 WER 486
>At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +3
Query: 12 KIPTPLNTSGVQLICLKGKAKYKASE--NAIVWKIKRMAGMKETQLSAEIXLLETDTKKK 185
K+ P N Q+ C+ + + E + I W++K +AG L L +K +
Sbjct: 424 KVEYPSNDEAFQIFCMNAFGQKQPHEGFDEIAWEVKALAGKLPLGLKVLGSALRGKSKPE 483
Query: 186 WTR 194
W R
Sbjct: 484 WER 486
>At4g30110.1 68417.m04281 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase family protein /
heavy-metal-associated domain-containing protein similar
to cadmium efflux pump protein from Geobacillus
stearothermophilus [GI:16753175], cadmium resistance
protein B from Staphylococcus aureus [GI:14020985]
Length = 951
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +2
Query: 122 GHEGDPAVCGDXAARDRHQEEVDAPAHLHGVRSSLCTLRIQGSLLKVFEPKLNYSDHD 295
GH D CGD + + HQ EV H S L + G + + +L S HD
Sbjct: 792 GHGHDSGCCGDKSQQP-HQHEVQVQQSCHNKPSGLDSGCCGGKSQQPHQHELQQSCHD 848
>At3g55610.1 68416.m06177 delta 1-pyrroline-5-carboxylate synthetase
B / P5CS B (P5CS2) identical to SP|P54888
Length = 726
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 66 KAKYKASENAIVWKIKRMAGMKETQLSAEIXLLETDTKKKWTRPP 200
+A YK S I W +A + +L A++ +L +D + +T PP
Sbjct: 163 RAPYKDS-TGIFWDNDSLAALLSLELKADLLILLSDVEGLYTGPP 206
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,795,116
Number of Sequences: 28952
Number of extensions: 207292
Number of successful extensions: 520
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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