Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1078
         (624 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7QXB2 Cluster: Chromosome chr19 scaffold_218, whole ge...    34   2.4  
UniRef50_Q22S96 Cluster: Putative uncharacterized protein; n=1; ...    34   3.2  

>UniRef50_A7QXB2 Cluster: Chromosome chr19 scaffold_218, whole
           genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr19 scaffold_218, whole genome shotgun
           sequence - Vitis vinifera (Grape)
          Length = 1900

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 167 IKCKGFEIRTPFWCELTLFVPSRRFWVHFRLYMK-FNIFILNI 292
           IK +G E+R   W   T FV +R FW  FR + + ++ FIL++
Sbjct: 435 IKSRGTEVREQKWLGKTNFVETRSFWQIFRSFDRMWSFFILSL 477


>UniRef50_Q22S96 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1948

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 19/51 (37%), Positives = 31/51 (60%)
 Frame = -3

Query: 412  YTLVLMILLTCQNRIKQLRFSSLYSYPSQLYMLTYPCIIIYIQYKNIKFHI 260
            +TL+L+I L    ++   RF+  YSY   +Y +  P III ++ K IKF++
Sbjct: 1891 FTLLLIIYLIVTEKLLIGRFNKEYSYFRTIYNMYMPDIII-LKEKRIKFYL 1940


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 547,846,323
Number of Sequences: 1657284
Number of extensions: 10189713
Number of successful extensions: 17062
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17059
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)