Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1078
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    26   3.8  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   6.7  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   6.7  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   8.9  

>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 156 SIVEFLH*DFLGIKTFF*WNVPTA*ITNTVYIQNMI*KKGLLSS 25
           + +EF    FL  K+ F WNV  A I   +Y+ N    K L++S
Sbjct: 243 AFIEFFLSGFLSYKSLFVWNVLFAFILPRLYVCNERSIKHLVAS 286


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 394 ILLTCQNRIKQLRFSSLYSYPSQLYMLTYPCIIIY 290
           +L TC N +K   F + Y    ++Y L     ++Y
Sbjct: 350 VLRTCANELKMTSFVTAYQASEKIYKLFDRICVLY 384


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 152 IDFHIIKCKGFEIRTPFW-CELTLFVPSRRFWVHFRLYMKFNIFILNIYNY 301
           +D +I   +G +    +W C+   FVP     +  +L+  F+  + NIY Y
Sbjct: 143 LDLYINFLQGLKKTVLYWLCKEYNFVPIYGVLLPLKLHPSFDTQLWNIYGY 193


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 306 HV*LYIFNIKILNFI*SLKCTQNLRDGTKSVNSHQN 199
           HV L+  N++I   I   + TQ   DGT ++NS  N
Sbjct: 542 HV-LHTANVQIKRLILCFEDTQQSNDGTANINSIVN 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,869
Number of Sequences: 5004
Number of extensions: 48819
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)