BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1078 (624 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_01_0935 + 7905748-7905765,7906071-7906096,7906142-7906166,790... 28 6.9 >07_01_0935 + 7905748-7905765,7906071-7906096,7906142-7906166, 7906891-7907700,7907803-7907934,7908102-7908470, 7908540-7908671,7909135-7909662 Length = 679 Score = 27.9 bits (59), Expect = 6.9 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -3 Query: 226 YKKC*LTPKRCSDFKSFTFYNV 161 Y C L +RCSDF + ++NV Sbjct: 464 YDYCLLPDQRCSDFSHYLYFNV 485 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,927,714 Number of Sequences: 37544 Number of extensions: 250400 Number of successful extensions: 388 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 381 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 388 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1513903616 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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