Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1078
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18700.1 68416.m02375 hypothetical protein                          28   5.8  
At5g13680.1 68418.m01593 IKI3 family protein weak similarity to ...    27   7.7  

>At3g18700.1 68416.m02375 hypothetical protein
          Length = 174

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 295 IYIQYKNIKFHIKSKVYPKPT 233
           I +++KNIKF +K + YP P+
Sbjct: 104 IGLKFKNIKFEVKGEEYPCPS 124


>At5g13680.1 68418.m01593 IKI3 family protein weak similarity to
           SP|O95163 IkappaB kinase complex-associated protein (IKK
           complex-associated protein) (p150) {Homo sapiens};
           contains Pfam profile PF04762: IKI3 family
          Length = 1319

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 196 CSDFKSFTFYNVEINRGIFALRLFRH*DF-FLVECTDRLNNEYGL 65
           C++  SF+FY+   N  +  L +    DF F+V+  D LN +  L
Sbjct: 608 CNNCSSFSFYSELANEVVTHLIILTKQDFLFIVDTKDVLNGDVAL 652


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,055,663
Number of Sequences: 28952
Number of extensions: 230681
Number of successful extensions: 369
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)